Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G18
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 186 8e-48
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 186 8e-48
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 3.4
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 27 5.9
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 27 5.9
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 27 5.9
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 27 5.9
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 27 5.9
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 27 5.9
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 27 5.9
Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical pr... 27 7.8
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 27 7.8
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 27 7.8
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 27 7.8
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 27 7.8
AF125964-3|ABA03110.1| 805|Caenorhabditis elegans Hypothetical ... 27 7.8
AF077536-8|AAT81208.1| 431|Caenorhabditis elegans Hypothetical ... 27 7.8
AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical ... 27 7.8
AF047655-2|ABD63245.1| 805|Caenorhabditis elegans Hypothetical ... 27 7.8
AF025465-10|AAB71023.1| 805|Caenorhabditis elegans Hypothetical... 27 7.8
AF016422-2|AAG24174.1| 805|Caenorhabditis elegans Hypothetical ... 27 7.8
AC024831-3|ABD63213.1| 805|Caenorhabditis elegans Hypothetical ... 27 7.8
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 186 bits (453), Expect = 8e-48
Identities = 77/100 (77%), Positives = 93/100 (93%)
Frame = +2
Query: 104 EDNVTDQTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTY 283
E NV +QTH+IVVPSY+ WFDYN+IH IEKRA+PEFFNGKNKSKTP++Y+AYRNFM+DTY
Sbjct: 73 EGNVIEQTHYIVVPSYAGWFDYNAIHQIEKRAMPEFFNGKNKSKTPDVYVAYRNFMVDTY 132
Query: 284 RLNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINYQ 403
RLNP EY+++TA RRNLAGDVC+I+R+H FLEQWGL+NYQ
Sbjct: 133 RLNPFEYVSATACRRNLAGDVCSIVRLHSFLEQWGLLNYQ 172
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +3
Query: 393 LTTKLEAESRPTAMGPPPTSHFHVLSDTPSGLQPL 497
L ++++++RP + PPPTSHF VL+DTP+G+QP+
Sbjct: 169 LNYQVDSDARPAPVAPPPTSHFMVLADTPTGIQPM 203
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 186 bits (453), Expect = 8e-48
Identities = 77/100 (77%), Positives = 93/100 (93%)
Frame = +2
Query: 104 EDNVTDQTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTY 283
E NV +QTH+IVVPSY+ WFDYN+IH IEKRA+PEFFNGKNKSKTP++Y+AYRNFM+DTY
Sbjct: 73 EGNVIEQTHYIVVPSYAGWFDYNAIHQIEKRAMPEFFNGKNKSKTPDVYVAYRNFMVDTY 132
Query: 284 RLNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINYQ 403
RLNP EY+++TA RRNLAGDVC+I+R+H FLEQWGL+NYQ
Sbjct: 133 RLNPFEYVSATACRRNLAGDVCSIVRLHSFLEQWGLLNYQ 172
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +3
Query: 393 LTTKLEAESRPTAMGPPPTSHFHVLSDTPSGLQPL 497
L ++++++RP + PPPTSHF VL+DTP+G+QP+
Sbjct: 169 LNYQVDSDARPAPVAPPPTSHFMVLADTPTGIQPM 203
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 330 TSPAMSAP*CVSTASSNSGASL--TTKLEAESRPTAMGPPPT 449
T+P S+ +ST S NSG+S +T +A S T+MGP P+
Sbjct: 603 TTPGTSSIPSIST-SVNSGSSTIGSTVTQAPSSSTSMGPSPS 643
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 433 IAVGRDSASSLVVNEAPLFEEAVDTHYGADIAGEVAPGR 317
+A + S S L+VN+A VD H G AG +A R
Sbjct: 48 LAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSR 86
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 122 QTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNG 220
Q + + P + WF+Y H I++ +PE +NG
Sbjct: 584 QLYGSLFPISTQWFEY-FYHTIQRTLVPEIYNG 615
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 20 APPLDTHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHH 133
APP D S S N + M ++L D+ D+ HH
Sbjct: 235 APPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRDHH 272
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 20 APPLDTHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHH 133
APP D S S N + M ++L D+ D+ HH
Sbjct: 231 APPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRDHH 268
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 20 APPLDTHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHH 133
APP D S S N + M ++L D+ D+ HH
Sbjct: 235 APPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRDHH 272
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 20 APPLDTHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHH 133
APP D S S N + M ++L D+ D+ HH
Sbjct: 231 APPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRDHH 268
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 20 APPLDTHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHH 133
APP D S S N + M ++L D+ D+ HH
Sbjct: 235 APPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRDHH 272
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 505 LAISGCSPEGVSDSTWK*EVGGGPIAVGRDSASSLVVNEAPLFEEAVDTHY 353
L+I+ E + T+K E GGP+ + ++++ +AP E + Y
Sbjct: 216 LSITAVKDERICTDTYKTEKAGGPLILNVSGKATVIGLKAPASRENCELFY 266
>Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical
protein K02B7.1 protein.
Length = 742
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 514 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 542
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 HEAATPAPPLDTHDDS---QGKHSDSNTQEMLTKEELEDNVTD 121
HE+ +P L T +S + H DS +E+ + EELE TD
Sbjct: 893 HESFSPTSELTTASESLSAEKVHLDSEDEELESLEELELYTTD 935
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 HEAATPAPPLDTHDDS---QGKHSDSNTQEMLTKEELEDNVTD 121
HE+ +P L T +S + H DS +E+ + EELE TD
Sbjct: 893 HESFSPTSELTTASESLSAEKVHLDSEDEELESLEELELYTTD 935
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 HEAATPAPPLDTHDDS---QGKHSDSNTQEMLTKEELEDNVTD 121
HE+ +P L T +S + H DS +E+ + EELE TD
Sbjct: 893 HESFSPTSELTTASESLSAEKVHLDSEDEELESLEELELYTTD 935
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +3
Query: 330 TSPAMSAP*CVSTASSNSGASLTTKLEAESRPTAMGPPPTSHFHVLSDT 476
+ P+ S+ VST S S +S TTK S PT P T LS T
Sbjct: 473 SGPSTSSGSTVSTTSGQSTSSGTTK-STTSGPTTSSGPSTVSERTLSTT 520
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 321 PGATSPAMSAP*CVSTASSNSGASLTTKLEAESRP 425
PG T+P ++AP ++ +S+ AS L A S P
Sbjct: 1148 PGPTAPKVTAPKPTTSTASSQAASTMAALLASSGP 1182
>AF125964-3|ABA03110.1| 805|Caenorhabditis elegans Hypothetical
protein W03G1.4 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 577 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 605
>AF077536-8|AAT81208.1| 431|Caenorhabditis elegans Hypothetical
protein C16A11.2b protein.
Length = 431
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 418 DSASSLVVNEAPLFEEAVDTH 356
++ SLV++EA LF++ DTH
Sbjct: 126 EALESLVIDEAELFQQVKDTH 146
>AF077536-7|AAT81207.1| 570|Caenorhabditis elegans Hypothetical
protein C16A11.2a protein.
Length = 570
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 418 DSASSLVVNEAPLFEEAVDTH 356
++ SLV++EA LF++ DTH
Sbjct: 265 EALESLVIDEAELFQQVKDTH 285
>AF047655-2|ABD63245.1| 805|Caenorhabditis elegans Hypothetical
protein C17B7.7 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 577 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 605
>AF025465-10|AAB71023.1| 805|Caenorhabditis elegans Hypothetical
protein K02E7.3 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 577 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 605
>AF016422-2|AAG24174.1| 805|Caenorhabditis elegans Hypothetical
protein R09E12.6 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 577 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 605
>AC024831-3|ABD63213.1| 805|Caenorhabditis elegans Hypothetical
protein Y55F3C.6 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 143 PSYSAWFDYNSIHMIEKRALPEFFNGKNKS 232
P + WF+Y H I++ +PE +NG S
Sbjct: 577 PLSTQWFEY-FYHTIQRTLVPEIYNGLGMS 605
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,754
Number of Sequences: 27780
Number of extensions: 266830
Number of successful extensions: 925
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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