Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G17
         (352 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   157   7e-39
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               157   7e-39
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   157   7e-39
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   119   3e-27
BC112177-1|AAI12178.1|  317|Homo sapiens hypothetical protein LO...    28   9.5  
BC110859-1|AAI10860.1|  461|Homo sapiens SMTNL2 protein protein.       28   9.5  
BC105050-1|AAI05051.1|  317|Homo sapiens smoothelin-like 2 protein.    28   9.5  
BC068549-1|AAH68549.1|  862|Homo sapiens LOC100101438 protein pr...    28   9.5  
AL365510-1|CAM19360.1|  862|Homo sapiens Novel protein similar t...    28   9.5  
AK124452-1|BAC85855.1|  317|Homo sapiens protein ( Homo sapiens ...    28   9.5  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  157 bits (382), Expect = 7e-39
 Identities = 75/79 (94%), Positives = 76/79 (96%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 65  AIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VANVSLLALYK KKERPRS
Sbjct: 125 VANVSLLALYKGKKERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  157 bits (382), Expect = 7e-39
 Identities = 75/79 (94%), Positives = 76/79 (96%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 65  AIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VANVSLLALYK KKERPRS
Sbjct: 125 VANVSLLALYKGKKERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  157 bits (382), Expect = 7e-39
 Identities = 75/79 (94%), Positives = 76/79 (96%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 65  AIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VANVSLLALYK KKERPRS
Sbjct: 125 VANVSLLALYKGKKERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  119 bits (286), Expect = 3e-27
 Identities = 56/59 (94%), Positives = 56/59 (94%)
 Frame = +3

Query: 66  FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 242
           FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>BC112177-1|AAI12178.1|  317|Homo sapiens hypothetical protein
           LOC342527 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -1

Query: 193 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVT 56
           ATL  LN +P    T W   P+P+   SSF+  W   PS G  AVT
Sbjct: 78  ATLGGLNPSPSEVITPWT--PSPSEKNSSFT--W-SVPSSGYGAVT 118


>BC110859-1|AAI10860.1|  461|Homo sapiens SMTNL2 protein protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -1

Query: 193 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVT 56
           ATL  LN +P    T W   P+P+   SSF+  W   PS G  AVT
Sbjct: 222 ATLGGLNPSPSEVITPWT--PSPSEKNSSFT--W-SVPSSGYGAVT 262


>BC105050-1|AAI05051.1|  317|Homo sapiens smoothelin-like 2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -1

Query: 193 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVT 56
           ATL  LN +P    T W   P+P+   SSF+  W   PS G  AVT
Sbjct: 78  ATLGGLNPSPSEVITPWT--PSPSEKNSSFT--W-SVPSSGYGAVT 118


>BC068549-1|AAH68549.1|  862|Homo sapiens LOC100101438 protein
           protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 PLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFL 41
           PL+P+P+    S SS   R  S G + +T+ P +
Sbjct: 401 PLKPSPSKKLRSGSSFSQRAGSSGNSCITYKPLV 434


>AL365510-1|CAM19360.1|  862|Homo sapiens Novel protein similar to
           phosphatidylinositol-4-phosphate 5-kinase, type I, alp
           protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 PLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFL 41
           PL+P+P+    S SS   R  S G + +T+ P +
Sbjct: 401 PLKPSPSKKLRSGSSFSQRAGSSGNSCITYQPLV 434


>AK124452-1|BAC85855.1|  317|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42461 fis, clone BRACE2026836, moderately
           similar to Mus musculus mRNA for smoothelin L1, large
           isoform. ).
          Length = 317

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -1

Query: 193 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVT 56
           ATL  LN +P    T W   P+P+   SSF+  W   PS G  AVT
Sbjct: 78  ATLGGLNPSPSEVITPWT--PSPSEKNSSFT--W-SVPSSGYGAVT 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,530,813
Number of Sequences: 237096
Number of extensions: 1274127
Number of successful extensions: 2232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)