Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G16
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.63
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 28 1.1
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 1.5
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 1.9
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 27 2.6
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 3.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 3.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 3.4
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 26 4.5
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 7.8
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.7 bits (61), Expect = 0.63
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 307 APPNHNHTLTRDEPQDLSCAKDAPTKMDVDTDAEYVSDSDSNDARLMPRKKLHRHPHSMA 486
A P++ L+R+ D + AK+AP + + +A S SND+ L P +
Sbjct: 837 AKPSNASQLSRNT--DDTQAKEAPKEASIPDNASTASTKVSNDSHLKPDADKKSVSSELT 894
Query: 487 MTAVTSLQDSTSQ 525
+ SL + T Q
Sbjct: 895 HASKPSLDEKTMQ 907
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 1.1
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 298 PASAPPNHNHTLTRDEPQDLSCAKDAPTKMDVDTDAEYVSDSDS--NDARLMPRKKLHRH 471
P N+NH D+ Q CAK+ ++++ V+ + S D ++ + KLH
Sbjct: 117 PVQTNTNNNHL---DDIQ--CCAKNLRLRLELAMYKVQVNQTFSPLQDLPIVAKTKLHNC 171
Query: 472 PHSMAMTAVTSLQD-STSQPSEFHTLVNTACSI 567
P+S +T++ + + S+ +P H N S+
Sbjct: 172 PNSEPVTSIWNQRSLSSGKPPSLHLSGNRRLSM 204
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 383 LVGASFAHDRSCGSSLVRVWL 321
L G+S + +SCGS R+WL
Sbjct: 51 LFGSSSSGSKSCGSPFTRIWL 71
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 1.5
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Frame = +1
Query: 199 DAPPGFNNPLEVVPRRLGLSNRGTDRGWSPA-----LRPAS---APPNHNHTLTRDEPQD 354
D PP F P +P L N T + A + P+ P N+ +
Sbjct: 49 DTPPAFKTPYSSLPYNLVPQNSSTSKKRPRAEDLLVIEPSQNSLVPSTQNNEWNEIARKR 108
Query: 355 LSCAKDAPTK----MDVDTDA---EYVSDSDSNDARLMPRKKLHRHPHSMAM 489
+S D P K +D+ T + D D + + K L RHPH + M
Sbjct: 109 VSLESDHPDKSGQVIDLATGQILDKQTEDIDDDRNKSAVSKSLVRHPHRLKM 160
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +1
Query: 268 TDRGWSPALRPASA--PPNHNHTLTRDEPQDLSCAKDAPTKMDVDTDAEYVSDSDSNDAR 441
T RG PA RP++A N N T + + K D + D V ++D + +
Sbjct: 766 TFRGHKPASRPSTANGTSNQNTTSEITTSETTATEKTPSNSSDTEDDVGDVVENDKDLLQ 825
Query: 442 LMPRKK 459
P KK
Sbjct: 826 FDPYKK 831
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -3
Query: 248 SRRGTTSKGLLKPGGASPAG--GTVTGWRGIPNNSSRRAFGCNNCGWSANGSASC 90
S R T K ++ G A+P G G RG+ + + F GW N C
Sbjct: 3 STRTTIIKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPC 57
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 343 EPQDLSCAKDAPTKMDVD 396
EPQDLS A+ AP K+D+D
Sbjct: 92 EPQDLSTAETAP-KVDID 108
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 163 MPRQPVTVPPAGDAPPGFNNPLE 231
MP P +PP G +P F LE
Sbjct: 761 MPEMPTRMPPPGPSPTMFGRSLE 783
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 236 TTSKGLLKPGGASPAGGTVTGWRGIPNNSSRRAFGCNN 123
T GL G A + T TG+ NN+S FG NN
Sbjct: 275 TPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNN 312
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 268 TDRGW-SPALRPASAPPNHNHTLT 336
TD W +P L +S PP NH++T
Sbjct: 231 TDWSWETPFLHSSSPPPRSNHSVT 254
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 476 CGCLWSFFLGINLAS-LESESDTYSASVSTSILVGASFAH 360
CG LW++F G++ LE + Y +S++ S + + F +
Sbjct: 56 CGLLWNWFHGVSARGLLEPKFLGYFSSIAISASLSSYFGY 95
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 400 DAEYVSDSDSNDARLMPRKKLHRHPHSMAMTAVTSLQD 513
+ E+V D +A PR+KL R H +T + D
Sbjct: 17 EPEFVKDPALRNANARPREKLQRLSHIQFSELLTDVAD 54
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -2
Query: 252 AKPAGYYFQGIVKTRRSVSCWRHGDGLAR 166
A P+G YF G+ T++ W++ +
Sbjct: 947 ASPSGDYFVGVSATQKECIIWKYSQDFVK 975
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,378
Number of Sequences: 5004
Number of extensions: 54606
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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