Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G12
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   135   5e-33
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   135   5e-33
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   10.0 

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  135 bits (326), Expect = 5e-33
 Identities = 61/88 (69%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   RHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYL 182
           +HGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +
Sbjct: 43  KHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVI 102

Query: 183 VLTTSGGIMDHEEARRKHLGGKILGFFF 266
           VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 103 VLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  135 bits (326), Expect = 5e-33
 Identities = 61/88 (69%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   RHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYL 182
           +HGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +
Sbjct: 43  KHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVI 102

Query: 183 VLTTSGGIMDHEEARRKHLGGKILGFFF 266
           VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 103 VLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 178  YPNCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWS 41
            Y N    S+FV L    +    RGE    +++  V++   LP  W+
Sbjct: 2943 YFNSRQKSEFVTLKGKFLEKLNRGEEANQMYAAAVQIDLGLPKAWA 2988


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 300  LFYY--PNELGSTTGSMIWGLHVY 365
            +FYY  PN+ G  +G  +WG  +Y
Sbjct: 1070 VFYYDGPNKDGLASGHWVWGTTLY 1093


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 FGYLVLTTSGGIMDHEEARRKHLGGKIL 254
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +3

Query: 237 LGGKILGFF---F*VYSIQVKIHFL----FYYPNELGSTTGSMIWGLHVYVLHIKFISQL 395
           +GG + GF    F +YS+   +  +    FY  + L S   S++ G+HV+  H+ ++  +
Sbjct: 360 MGGYLAGFILVMFLLYSLAPILFRMSSATFYNISLLTSDFWSLVIGIHVFGYHVYWLYPI 419

Query: 396 IF 401
            F
Sbjct: 420 AF 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,487
Number of Sequences: 5004
Number of extensions: 50737
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)