Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G12
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          157   7e-39
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   146   1e-35
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           96   1e-20
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    42   3e-04
11_01_0526 - 4140853-4141017,4141416-4141619                           28   4.4  
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648...    28   4.4  
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    27   7.7  
01_06_0507 - 29893563-29894470,29895227-29895419                       27   7.7  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  157 bits (380), Expect = 7e-39
 Identities = 70/88 (79%), Positives = 79/88 (89%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   RHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYL 182
           +HGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+
Sbjct: 43  KHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYI 102

Query: 183 VLTTSGGIMDHEEARRKHLGGKILGFFF 266
           VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 103 VLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  146 bits (353), Expect = 1e-35
 Identities = 67/84 (79%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   RHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYL 182
           +HGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+
Sbjct: 43  KHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYI 102

Query: 183 VLTTSGGIMDHEEARRKHLGGKIL 254
           VLTTS GIMDHEEARRK++GGK L
Sbjct: 103 VLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 40/85 (47%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12  GYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVL 188
           GYI +FE++D HR GKI V L GR+  C  ++ R D+   +IE++   +LP+RQ+GY+V+
Sbjct: 44  GYIKKFEVIDPHRVGKINVELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVI 103

Query: 189 TTSGGIMDHEEARRKHLGGKILGFF 263
           TT  G++DHEEA ++++GG++LG+F
Sbjct: 104 TTPNGVLDHEEAIKQNVGGQVLGYF 128


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 36   VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 137
            VDDH++G+I++   GRLNK GVIS R DV +  +
Sbjct: 912  VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 149
           G++   +   LNKCGVI+P     I+D+   T
Sbjct: 78  GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109


>06_01_0853 +
           6486027-6486158,6486561-6486692,6486974-6486978,
           6487948-6488017,6489456-6489776
          Length = 219

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 239 WRKNSRLLFLSLFNTSENTFFVLL 310
           W+K +++LFL L N  + T F +L
Sbjct: 18  WQKEAKILFLGLDNAGKTTLFYML 41


>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 172 NCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISN 26
           N LDG     + +SL G  K   M   +  L V  TTILP ++  ++SN
Sbjct: 118 NSLDGD----IPISLGGCPKLHAMNLSMNHLSVSATTILPVIFPKSLSN 162


>01_06_0507 - 29893563-29894470,29895227-29895419
          Length = 366

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 137 REVDKLATVQTVWVPCSHNKWWHHGS*GSQKETSWRKNSRLL 262
           RE    ATV T W+     +WWH    G     + R+  RLL
Sbjct: 156 REHGATATVVTAWISW---RWWHQRLVGGDSTVAGRRLWRLL 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,177
Number of Sequences: 37544
Number of extensions: 312406
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)