Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G12
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   162   2e-40
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   5.2  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   6.9  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  162 bits (393), Expect = 2e-40
 Identities = 74/88 (84%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   RHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYL 182
           +HGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL
Sbjct: 43  KHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYL 102

Query: 183 VLTTSGGIMDHEEARRKHLGGKILGFFF 266
           +LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 103 ILTTSAGIMDHEEARRKHLGGKILGFFF 130


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -3

Query: 320 LIRVIKQKMYFHLY*INLEKEA*NFSSKMFPSGFLMIHDATTCCENKVPKLSGR*QVCPP 141
           L + +K ++Y H   +NL+KE     S +F S FLM+ +     E +V K+S   ++C P
Sbjct: 74  LSQKLKNELYLH---VNLKKEQQTSRSSIFESIFLMLEELGIIGE-RVTKIS---KLCVP 126


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 33  IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 152
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,610
Number of Sequences: 27780
Number of extensions: 279083
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)