Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G09
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   4.7  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   4.7  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    24   6.2  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    24   6.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   8.2  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 114 EDPNEKGYPCAVGTPQSAPRTINFEASYSQTAGCCDA 224
           + P   G+PC    P  AP  ++ E    +    CDA
Sbjct: 743 QSPCHAGHPCDERIPCKAPLEVSCECGRIRKKVTCDA 779


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +1

Query: 154 RLSPRRGRLTSRLRTPRPQDVVMPNEAEGNSM*VAQDGFVRFRPVDDTPSQT*FTINLSR 333
           R+S     ++ RLR      V++P+E E   +    +  V + P D T      +I +++
Sbjct: 174 RISFNSQGVSGRLRRNMDSTVIIPSEDEDLQLPSNSNSNVEYGPFDSTTFDRQLSIEVNQ 233

Query: 334 AAEDLSL 354
               +SL
Sbjct: 234 PVGAMSL 240


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 105 HRDQSI*AYREKGSLSHVSDYRSNSPS 25
           HR  S  A+R++GS++ +  Y  N P+
Sbjct: 56  HRAPSPAAFRKRGSITSMDQYLVNMPA 82


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 72  FPDRPKSTDLYGFSEDPNEKGYPCAVGTPQSAPRTI 179
           FPD P++T    F+E   E  +      P+  P T+
Sbjct: 214 FPDVPETTKAPYFTEQEKELSFKRLPARPKKKPLTL 249


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 17 VYVDGEFER*SETWES 64
          +Y++GE+ + +ETWE+
Sbjct: 23 LYINGEWHKSAETWET 38


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = -1

Query: 179 NRPRRGLRRAYSARIPFLIRVFRK------PIEISRFR-PIGKRVHFPT 54
           N P +  RRAYSA IP       K      P++ S  +  + KR  FPT
Sbjct: 511 NIPNQFQRRAYSATIPVKNESLAKPSVSPMPLQQSTGKTEVAKRAQFPT 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,404
Number of Sequences: 5004
Number of extensions: 31352
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)