Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G09
(359 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47362-1|CAA87440.1| 380|Homo sapiens T cell factor 1 splice fo... 31 0.81
AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protei... 31 1.4
AY946007-1|AAY23346.1| 522|Homo sapiens peripheral clock protei... 31 1.4
AK124659-1|BAC85920.1| 292|Homo sapiens protein ( Homo sapiens ... 31 1.4
BC110893-1|AAI10894.1| 480|Homo sapiens C19orf55 protein protein. 28 7.6
BC017947-1|AAH17947.1| 201|Homo sapiens C19orf55 protein protein. 28 7.6
BC001041-1|AAH01041.3| 679|Homo sapiens NSUN2 protein protein. 28 7.6
AK055219-1|BAB70878.1| 324|Homo sapiens protein ( Homo sapiens ... 28 7.6
AK000310-1|BAA91075.1| 531|Homo sapiens protein ( Homo sapiens ... 28 7.6
AB255451-1|BAF34150.1| 767|Homo sapiens putative 5-methycytoisi... 28 7.6
>Z47362-1|CAA87440.1| 380|Homo sapiens T cell factor 1 splice form
E protein.
Length = 380
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 RPKGTVCRSHKMDSSG-SDRWTTRHRKPDLL 319
RP CR+H+ + DRW +RHR P L
Sbjct: 345 RPPAAPCRAHRYSNRNLRDRWPSRHRTPGRL 375
>AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protein 2
protein.
Length = 1841
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 36 SSGSQKRGKVNPFPDRPKSTDLYGFSEDP-NEKGYP------CAVGTPQSAPRTINFEAS 194
SSG K N RP++ +G++EDP + P A GT APR + AS
Sbjct: 1745 SSGKVSSQKQNEAEPRPQTCSSFGYAEDPMASQPLPDWGSEVAATGTQDKAPRMCTYSAS 1804
Query: 195 YSQTAGCCDAERGRREQYVGRTRWIRPVQT 284
+ D + G GR + ++ +++
Sbjct: 1805 GGSNSD-SDLDYGDNGFGAGRGQLVKALKS 1833
>AY946007-1|AAY23346.1| 522|Homo sapiens peripheral clock protein 1
protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 36 SSGSQKRGKVNPFPDRPKSTDLYGFSEDP-NEKGYP------CAVGTPQSAPRTINFEAS 194
SSG K N RP++ +G++EDP + P A GT APR + AS
Sbjct: 426 SSGKVSSQKQNEAEPRPQTCSSFGYAEDPMASQPLPDWGSEVAATGTQDKAPRMCTYSAS 485
Query: 195 YSQTAGCCDAERGRREQYVGRTRWIRPVQT 284
+ D + G GR + ++ +++
Sbjct: 486 GGSNSD-SDLDYGDNGFGAGRGQLVKALKS 514
>AK124659-1|BAC85920.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ42668 fis, clone BRAMY2020270. ).
Length = 292
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 36 SSGSQKRGKVNPFPDRPKSTDLYGFSEDP-NEKGYP------CAVGTPQSAPRTINFEAS 194
SSG K N RP++ +G++EDP + P A GT APR + AS
Sbjct: 196 SSGKVSSQKQNEAEPRPQTCSSFGYAEDPMASQPLPDWGSEVAATGTQDKAPRMCTYSAS 255
Query: 195 YSQTAGCCDAERGRREQYVGRTRWIRPVQT 284
+ D + G GR + ++ +++
Sbjct: 256 GGSNSD-SDLDYGDNGFGAGRGQLVKALKS 284
>BC110893-1|AAI10894.1| 480|Homo sapiens C19orf55 protein protein.
Length = 480
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/90 (24%), Positives = 36/90 (40%)
Frame = +3
Query: 6 WHEASTSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDPNEKGYPCAVGTPQSAPRTINF 185
W S + + S R + + P PK+ S + E+ +P + GTP S P T
Sbjct: 26 WPSQSQTWCPKTLSPSRSQRSRLPQAPKALATGPNSPELFEESWPSSSGTP-SLPSTTEG 84
Query: 186 EASYSQTAGCCDAERGRREQYVGRTRWIRP 275
+ S D+ +Y+ R R +P
Sbjct: 85 QMWASPAPTLIDSGDSVVAKYINRFRQAQP 114
>BC017947-1|AAH17947.1| 201|Homo sapiens C19orf55 protein protein.
Length = 201
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/90 (24%), Positives = 36/90 (40%)
Frame = +3
Query: 6 WHEASTSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDPNEKGYPCAVGTPQSAPRTINF 185
W S + + S R + + P PK+ S + E+ +P + GTP S P T
Sbjct: 33 WPSQSQTWCPKTLSPSRSQRSRLPQAPKALATGPNSPELFEESWPSSSGTP-SLPSTTEG 91
Query: 186 EASYSQTAGCCDAERGRREQYVGRTRWIRP 275
+ S D+ +Y+ R R +P
Sbjct: 92 QMWASPAPTLIDSGDSVVAKYINRFRQAQP 121
>BC001041-1|AAH01041.3| 679|Homo sapiens NSUN2 protein protein.
Length = 679
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 18 STSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDP 122
+T + ++GS+K G P P K L+GF EDP
Sbjct: 399 ATEDLENNGSKKDGVCGPPPS--KKMKLFGFKEDP 431
>AK055219-1|BAB70878.1| 324|Homo sapiens protein ( Homo sapiens
cDNA FLJ30657 fis, clone DFNES2000335. ).
Length = 324
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/90 (24%), Positives = 36/90 (40%)
Frame = +3
Query: 6 WHEASTSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDPNEKGYPCAVGTPQSAPRTINF 185
W S + + S R + + P PK+ S + E+ +P + GTP S P T
Sbjct: 26 WPSQSQTWCPKTLSPSRSQRSRLPQAPKALATGPNSPELFEESWPSSSGTP-SLPSTTEG 84
Query: 186 EASYSQTAGCCDAERGRREQYVGRTRWIRP 275
+ S D+ +Y+ R R +P
Sbjct: 85 QMWASPAPTLIDSGDSVVAKYINRFRQAQP 114
>AK000310-1|BAA91075.1| 531|Homo sapiens protein ( Homo sapiens
cDNA FLJ20303 fis, clone HEP06676. ).
Length = 531
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 18 STSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDP 122
+T + ++GS+K G P P K L+GF EDP
Sbjct: 251 ATEDLENNGSKKDGVCGPPPS--KKMKLFGFKEDP 283
>AB255451-1|BAF34150.1| 767|Homo sapiens putative 5-methycytoisine
methyltransferase protein.
Length = 767
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 18 STSMVNSSGSQKRGKVNPFPDRPKSTDLYGFSEDP 122
+T + ++GS+K G P P K L+GF EDP
Sbjct: 487 ATEDLENNGSKKDGVCGPPPS--KKMKLFGFKEDP 519
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,032,959
Number of Sequences: 237096
Number of extensions: 1179829
Number of successful extensions: 2896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -