Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G09
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 30 0.42
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 30 0.42
Z81491-15|CAB04022.2| 216|Caenorhabditis elegans Hypothetical p... 30 0.56
AC024202-6|AAF36035.1| 199|Caenorhabditis elegans Mediator prot... 27 3.9
Z83129-11|CAB63323.2| 131|Caenorhabditis elegans Hypothetical p... 26 6.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 26 6.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 26 6.9
U52003-2|AAY43981.1| 554|Caenorhabditis elegans Hypothetical pr... 26 6.9
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 26 9.1
AL021571-3|CAC70102.2| 344|Caenorhabditis elegans Hypothetical ... 26 9.1
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 299 GVSSTGLNRTNPSCATYILFPSASFGITTSC----GLGVRSLEVNRPRR 165
GVSS G R++ C T + + FGI+ +C G R+ E + P+R
Sbjct: 174 GVSSYGNKRSDEFCGTSPILEAKGFGISNTCFNCKKYGHRATECSAPQR 222
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 299 GVSSTGLNRTNPSCATYILFPSASFGITTSC----GLGVRSLEVNRPRR 165
GVSS G R++ C T + + FGI+ +C G R+ E + P+R
Sbjct: 174 GVSSYGNKRSDEFCGTSPILEAKGFGISNTCFNCKKYGHRATECSAPQR 222
>Z81491-15|CAB04022.2| 216|Caenorhabditis elegans Hypothetical
protein D1086.7 protein.
Length = 216
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 272 TNPSCATYILFPSASFGITTSCGLGVRSL 186
TN C T+ FPS + I T+ GL V S+
Sbjct: 87 TNAVCKTFAPFPSPASSINTNTGLSVNSI 115
>AC024202-6|AAF36035.1| 199|Caenorhabditis elegans Mediator protein
19 protein.
Length = 199
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 96 DLYGFSEDPNEKGYP 140
D YGF +D EKG+P
Sbjct: 150 DAYGFDDDETEKGFP 164
>Z83129-11|CAB63323.2| 131|Caenorhabditis elegans Hypothetical
protein W06G6.11 protein.
Length = 131
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = +3
Query: 111 SEDPNEKGYPCAVGTPQ-------SAPRTINFEASYSQTAGCCDAER 230
S DPN GYP + T Q P E ++ + CC AE+
Sbjct: 56 SSDPNSTGYPANLITTQPPFVPSDKTPGETEKEDKNAEESSCCTAEK 102
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 75 PDRPKSTDLYGFSEDPNEKGYPCAVGTP 158
P RP S L G+ P + G+P G P
Sbjct: 634 PGRPGSDGLPGYPGGPGQNGFPGLQGEP 661
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 75 PDRPKSTDLYGFSEDPNEKGYPCAVGTP 158
P RP S L G+ P + G+P G P
Sbjct: 633 PGRPGSDGLPGYPGGPGQNGFPGLQGEP 660
>U52003-2|AAY43981.1| 554|Caenorhabditis elegans Hypothetical
protein ZK381.8 protein.
Length = 554
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 24 SMVNSSGSQKRGKVNPFPDRPKSTDL-YGFSED 119
S + SS + KRGKV PDR ST + + ++ED
Sbjct: 370 SSLRSSPTVKRGKVVVKPDRYNSTWIHFSYNED 402
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 15 ASTSMVNSSGSQKR-GKVNPFPD-RPKSTDLYGFSEDPNE 128
AST+ +NSS S+K+ + PD +P S + + S+D E
Sbjct: 340 ASTTTINSSNSRKQHASIMKGPDGKPVSRNTFKLSDDIEE 379
>AL021571-3|CAC70102.2| 344|Caenorhabditis elegans Hypothetical
protein T19A6.4 protein.
Length = 344
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 287 TGLNRTNPSCATYILFPSASFGITTSCGLG 198
+ + + NPS +Y++ PS G+ + G+G
Sbjct: 249 SAVKKNNPSLPSYLVLPSLFGGLLFAIGMG 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,801,722
Number of Sequences: 27780
Number of extensions: 184773
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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