Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G08
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.2  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   1.5  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   2.7  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   4.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   4.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   6.2  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.2  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -2

Query: 220 KPFKSCSIPKLKLTLHKIKCKKYFIFLLKEHNINFTIKLLHVKTKTNTETPVTGCDPNII 41
           +P K+C   KL+ T H    +K         N+   ++ L    K NT   ++   P+ +
Sbjct: 45  RPCKNCKAGKLECTYHMPSSRKSSFSPEYVENLESRVRYLETLLKKNTNFDLSSNSPSFL 104


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 300 YLLLCLLNYRVILYCQANLIQIIYYHQNPSNHVLFRN*SLR 178
           YL +CL     +L C   +I   Y H N  N  LF+N S +
Sbjct: 68  YLAVCLFFLASVLSCA--IIFRFYLHTNRENFSLFKNDSYK 106


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 LCSFNKNMKYFLHFILCSVSFSFGIEHDLKGFD 224
           + SF     +FLH +L   +FS+ I+ +   FD
Sbjct: 1   MLSFTSVFSFFLHALLLKTAFSYVIKRNNPVFD 33


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 300 YLLLCLLNYRVILYCQANLIQ 238
           YL+LCL N ++++ C+   +Q
Sbjct: 141 YLMLCLQNSKILIVCETGGLQ 161


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 142 LLKEHNINFTIKLLHVKTKTNTETPVTGCDPNIILINMDDCRYVS 8
           L KE N +  IK L  KTK+N   P +  DP+ I  + D+   ++
Sbjct: 56  LQKETNSDNKIKKLS-KTKSNPTNPKSEEDPSQICQSFDESNIIT 99


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 255 GNIESLDNLVD--TEVNKPEFQNKELLQITTSQKEKYECLIPELSTDETIRIED 410
           G  +S D L++  T+ N P  +N  L     ++ EKY     +L+ D  ++ +D
Sbjct: 722 GGAKSWDQLLEIYTKTNDPYVRNSCLRAFGVTEDEKYIQKTLDLTLDPIVKEQD 775


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 240  QIIYYHQNPSNHVLFRN*SLRYTK*SAKNTSYFY*KNII 124
            ++I    N SNHVL    + + TK  +KN   F  K ++
Sbjct: 1219 EVIRLVSNLSNHVLTNESARQLTKIRSKNAKVFSSKRLV 1257


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 154 YFIFLLKEHNINFTIKLLHVKTKTN-TETPVTGCDPNII 41
           YFI L+    IN  + LLH +  T+ TE  +  C  N +
Sbjct: 349 YFIALINNGIINIELPLLHRRILTHTTEWNINWCIFNFV 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,146
Number of Sequences: 5004
Number of extensions: 31262
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)