Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G08
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    32   0.15 
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    31   0.34 
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    30   0.59 
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    30   0.59 
AL117195-7|CAB55028.1|  158|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical...    29   1.8  
U41550-2|AAA83285.2|  301|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical...    27   7.2  
Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z81589-1|CAB04717.1|  272|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 321 LCSETRAYLLLCLLNYRVILYCQANLIQIIYYHQNPSNHVLFR 193
           LC+ T  +L LC+ N +      +NLIQ    H  PS H ++R
Sbjct: 396 LCAFTSKFLRLCVHNRKTFYAMYSNLIQEFQGH-TPSTHAIYR 437


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 105 NFIVKLILCSFNKNMKYFLHFILCSVSFSFGIEHD 209
           NF V  + C F  N+KYF ++I+  + FSF + ++
Sbjct: 386 NFFVLHLFC-FYHNIKYFFYYIIFMLLFSFNLNYN 419


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 232 ILSSKPFKSCSIPKLKLTLHKIKCKKYFI 146
           +L SK  +S  +P+L L  H+ +CK+Y +
Sbjct: 255 LLPSKDPRSSKMPRLDLNQHQFRCKQYIV 283


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 232 ILSSKPFKSCSIPKLKLTLHKIKCKKYFI 146
           +L SK  +S  +P+L L  H+ +CK+Y +
Sbjct: 255 LLPSKDPRSSKMPRLDLNQHQFRCKQYIV 283


>AL117195-7|CAB55028.1|  158|Caenorhabditis elegans Hypothetical
           protein Y57A10A.9 protein.
          Length = 158

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 223 SKPFKSCSIPKLKLTLHKIK-CKKYFIFLLKEHNINFTIKLL 101
           +KP  + ++P++   L   +  +KY  +LLKEHN  + ++ L
Sbjct: 5   TKPVSNAALPRVPAPLSPAQQVRKYTDYLLKEHNRYYALECL 46


>AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical
           protein C45H4.18 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 148 IFLLKEHNINFTIKLLHVKTKTNTETPVT 62
           + L+K H INF  KL   K+K+ +ET +T
Sbjct: 214 LMLVKIHRINFVRKLTQQKSKSASETVLT 242


>U41550-2|AAA83285.2|  301|Caenorhabditis elegans Hypothetical
           protein R04A9.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 93  FTCNNFIVKLILCSFNKNMKYFLHFI 170
           F C N + ++ + S+ +   YF HFI
Sbjct: 146 FVCENNVKEITMTSYTEETTYFFHFI 171


>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 273 DNL-VDTEVNKPEFQNKELLQITTSQKEKYECLIPELSTDETIRIEDY 413
           DNL +++ V K E  +KEL++   +  EK    +  +  D TIR +D+
Sbjct: 744 DNLPINSYVGKVEVASKELVKFEMTSDEKGMSSLFGIEEDGTIRSKDW 791


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +3

Query: 72  VSVFVLVFTCNNFIVKLIL-------CSFNKNMKYFLHFILCSVS 185
           +SV V V  C   I+ LIL       C F +N  Y   F++C+V+
Sbjct: 258 ISVIVTVVVCGVGIIALILEVVPPFLCHFVENCIYLNPFLICTVT 302


>AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical
           protein Y54E2A.12 protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 102 NNFIVKLILCSFNKNMKYFLHFILCSVSFSFGIEHDLKGFDDNILFGLSWP 254
           NN+++K +  S  + +   L+ IL  V  S  +E  ++  +   +FGLSWP
Sbjct: 226 NNYLLKTLEKSVVRELD-LLYVILSRVDPS--LEQVMRSVELGTMFGLSWP 273


>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 120 LILCSFNKNMKYFLHFILCSVSFSFGIEHD 209
           LI  +FNKN+++  +  L  ++FSF  E+D
Sbjct: 158 LIGRNFNKNLQFLYYLTLGFLAFSFVSEND 187


>Z81589-1|CAB04717.1|  272|Caenorhabditis elegans Hypothetical
           protein T08G5.1 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 265 SILPGQLNPNNILSSKPFKSCSIPKLKLTL-HKI-----KCKKYFIFLLKEHNIN 119
           ++ P  L   +I + +PF+   IPK+ + + HKI       KKY   LL    +N
Sbjct: 214 AVPPSHLKGKSISAKQPFRYRGIPKIIMEMYHKIIFFTENSKKYLSSLLNSRILN 268


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 219 FDDNILFGLSWPG--NIESLDNLVDTEVNKPEFQNKELLQITTSQKEKYECLIPELSTDE 392
           FD+      SW G  N+ S+ + ++ + + P  ++  L ++     ++ + + PE+  DE
Sbjct: 117 FDEPSGTPFSWFGFPNLNSIKDEMEDDDSDPALESSVLDRLLAQTAQRLDSISPEIENDE 176

Query: 393 T 395
           +
Sbjct: 177 S 177


>AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical
           protein F22F7.4 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 220 KPFKSCSIPKLKLTLHKIKCKKYFIFL 140
           KP+    +P+ +  +H I+  K F+FL
Sbjct: 4   KPYNFIVLPRYRYKIHPIRVLKLFVFL 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,654,444
Number of Sequences: 27780
Number of extensions: 168788
Number of successful extensions: 538
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)