Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G08
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    28   0.049
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.4  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 0.049
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 222 DDNILFGLSWPGNIESLDNLVDTEVNKPEFQNK 320
           D +   G+ WPG+   L N   T  N P+ Q K
Sbjct: 84  DADFCCGMRWPGDATGLSNRSSTSSNDPKNQYK 116


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 66  TGVSVFVLVFTCNNFIVKLILCSFNKNMKYFLHFILC 176
           T  SV   +  CN+ I   I   F+K+ ++    I+C
Sbjct: 42  TVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 66  TGVSVFVLVFTCNNFIVKLILCSFNKNMKYFLHFILC 176
           T  SV   +  CN+ I   I   F+K+ ++    I+C
Sbjct: 490 TVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIIC 526


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 261 YCQANLIQIIYYHQNPSNHVLFRN*SLR 178
           YC   +I IIYY+    +HV+    +LR
Sbjct: 220 YC-IPMILIIYYYSQIVSHVVNHEKALR 246


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 235 NILSSKPFKSCSIPKLKLTLHKIKCKKYFIFLLKEHNIN 119
           NI++S    + ++  +       K KKYF   L E N N
Sbjct: 21  NIIASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFN 59


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 330 VTILCSETRAYLLLCLLNYRV 268
           +T +CS +   L L LLN+ V
Sbjct: 26  LTDVCSASNGELFLALLNFFV 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,742
Number of Sequences: 438
Number of extensions: 2274
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)