Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G06
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   158   4e-40
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   157   7e-40
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   9.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  158 bits (384), Expect = 4e-40
 Identities = 73/128 (57%), Positives = 92/128 (71%)
 Frame = +3

Query: 78  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 257
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 258 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 437
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 438 PAQDHQPI 461
           P  D Q I
Sbjct: 130 PRADAQAI 137



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 466 EASYVNIPVIALCNTDSPL 522
           EAS+VNIPVIALC+TDS L
Sbjct: 139 EASFVNIPVIALCDTDSIL 157


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  157 bits (382), Expect = 7e-40
 Identities = 70/132 (53%), Positives = 94/132 (71%)
 Frame = +3

Query: 66  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 245
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 246 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 425
                 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 426 IVLDPAQDHQPI 461
           +V DP  D Q I
Sbjct: 125 VVTDPRADAQAI 136



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 466 EASYVNIPVIALCNTDSPL 522
           EAS+VNIPVIALC+TDS L
Sbjct: 138 EASFVNIPVIALCDTDSIL 156


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 51  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD-GTHVIN 209
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H+++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,647
Number of Sequences: 5004
Number of extensions: 39033
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)