Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G03
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61949-7|AAB03155.1|  510|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U61949-7|AAB03155.1|  510|Caenorhabditis elegans Hypothetical
           protein F49E8.7a protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 94  PIYTNAMVFAHSIGIIISLREIF*FGSRSQRLS 192
           P++T++  F  +IGI+I  +E     SRS RLS
Sbjct: 49  PLFTSSGTFEETIGILIQWQEY--LKSRSDRLS 79


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  SNLHQRNGLRPQHRHHHIPTRDLLVWLKI 179
           +N H+ N    QH  +H  T   L+WL I
Sbjct: 647 TNQHETNNSHQQHNAYHHTTTANLLWLVI 675


>Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical
           protein T01D3.4 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 88  QFPIYTNAMVFAHSI-GIIISLREIF*FGSRSQRLSI*STNNFID 219
           QF IYT +++F HS  G+II L   F F +  +R  I ++N  ++
Sbjct: 253 QFFIYTFSLLFVHSADGLIICL---FHFNASCRRRKIQNSNGNLE 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,631
Number of Sequences: 27780
Number of extensions: 95566
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)