Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G02
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 1.0
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 1.8
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 24 2.3
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 24 2.3
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 24 3.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 23 4.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 23 7.1
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 23 7.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 7.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 22 9.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 22 9.4
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 22 9.4
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 22 9.4
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 22 9.4
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 22 9.4
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 89 QPGQRCDRSFENRVPDQNLCRPWVPSLP 6
+PG DR + R NLC+ VP P
Sbjct: 655 EPGSPLDRELQRRSIAVNLCQKSVPLFP 682
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 134 SHPPGQVPYLSLINWQ 87
SH +PY +L+NWQ
Sbjct: 145 SHSKKMLPYQALVNWQ 160
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 24.2 bits (50), Expect = 2.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -3
Query: 216 MSSRDVTVKSRPMFPW*EVKNY 151
+ RD++ K P +PW + K++
Sbjct: 445 LKQRDISFKFMPNYPWEKAKDF 466
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 194 SNRDRCFRGKKSKTTGLFSNSHPPGQVPYLSLINWQP 84
++R+ K+ G ++ G P LSLI+ QP
Sbjct: 687 NDREALRNSKRISNPGCYATGSQVGLTPILSLIDGQP 723
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 145 NPVVFDFLPRKHRSRFDGDV 204
N + DF+ +K R R +GDV
Sbjct: 308 NSIRLDFISKKLRKRLNGDV 327
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 55 FSNERSQRCPGC 90
+S + +QRCPGC
Sbjct: 358 YSRQFTQRCPGC 369
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 136 FENNPVVFDFLPRKHRSRFD 195
++ NP VFD RK + R D
Sbjct: 465 YQQNPEVFDQKARKSKERAD 484
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +1
Query: 4 RGKDGTHGLQRFWSGTRF 57
+G+ THG+ FW + F
Sbjct: 196 KGEGKTHGIMIFWKSSLF 213
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 148 DCFRTVTRPDRSLTCP*STGSRDNVVTARLRTESPTRTSA 29
D + V RPD + P + S ++ + +E+P R ++
Sbjct: 167 DLYNMVPRPDANTVSPHAARSASSLPVPKEASETPFRDAS 206
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 110 YLSLINWQPGQRCDRSFENRVP 45
Y+SL W P + D + +R P
Sbjct: 2390 YVSLAEWNPRSKVDSTSFSRFP 2411
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 28 LQRFWSGTRFSNERSQRCP 84
LQR + T F NE S R P
Sbjct: 42 LQRLFPSTWFKNESSSRHP 60
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 136 FENNPVVFDFLPRKHRSRFD 195
+ P+V DFL +R FD
Sbjct: 92 YSGQPIVKDFLNENYRHTFD 111
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 107 GKGPVRAGDCSKTIQ*FLTSYHGNIGRDLTVTSRLDIWHFVL 232
G G R GD S I+ HG RD + + +++ +
Sbjct: 74 GTGHARVGDASSPIRRGGAKSHGPKPRDFSTKLQTQVYNLAM 115
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 239 REARQSARCQVATSPSNRDRCFRGKKSKTTGLFSNS 132
+E + + A +NRD +GKK+K + S S
Sbjct: 316 KEVPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQS 351
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 22.2 bits (45), Expect = 9.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 187 ATDVSVVRSQKLLDCFRTVTRPDRSLTCP*STGSRDNVVTARLRTESPTRTSADR 23
A+D ++KLL + +P S GS VT E+P+ +A+R
Sbjct: 277 ASDRLNALNEKLLQGIQQSHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANR 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,929
Number of Sequences: 5004
Number of extensions: 19151
Number of successful extensions: 39
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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