Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G02
(239 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071227-1|AAL48849.1| 302|Drosophila melanogaster RE26725p pro... 29 1.1
AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p pro... 26 6.1
AY089325-1|AAL90063.1| 263|Drosophila melanogaster AT13643p pro... 26 6.1
AY071228-1|AAL48850.1| 326|Drosophila melanogaster RE26822p pro... 26 6.1
AF179590-1|AAD53181.1| 735|Drosophila melanogaster ubiquitin-sp... 26 6.1
AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-P... 26 6.1
AE014297-2781|AAG22161.1| 355|Drosophila melanogaster CG5085-PA... 26 6.1
AY058719-1|AAL13948.1| 316|Drosophila melanogaster LD46256p pro... 26 8.1
AY051730-1|AAK93154.1| 550|Drosophila melanogaster LD25919p pro... 26 8.1
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su... 26 8.1
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ... 26 8.1
AE014296-973|AAF50767.2| 1929|Drosophila melanogaster CG5146-PA ... 26 8.1
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P... 26 8.1
>AY071227-1|AAL48849.1| 302|Drosophila melanogaster RE26725p
protein.
Length = 302
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 231 KTKCQMSSRDVTVKSRPMFPW*EVKNYWIVFEQSPARTGPLPVPNQLAAGTTL*PLV*EP 52
+T+ + D++V RP+ + ++ P P P P+ G + P+ P
Sbjct: 142 QTEIKPDPDDLSVPDRPLDAT-PSSLFTVLPAPMPVEEPPTPPPSVPKIGDIISPV--HP 198
Query: 51 SPRPEPLQTVGPILTSC 1
P P P+ P+LT+C
Sbjct: 199 DPAPVPIAGNCPLLTAC 215
>AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p protein.
Length = 1765
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 205 RRHRQIATDVSVVRSQKLLDCFRTVTRPDRSLTCP*STGSRDNVVTARLRTESPTRTSAD 26
R ++ T + V+ + +LL RP T ++ S NVVT RLR + S D
Sbjct: 1517 RNADELDTSLDVLENSRLLSAIANHRRP----TSTTNSNSASNVVTRRLRGRASQANSHD 1572
>AY089325-1|AAL90063.1| 263|Drosophila melanogaster AT13643p
protein.
Length = 263
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 205 RRHRQIATDVSVVRSQKLLDCFRTVTRPDRSLTCP*STGSRDNVVTARLRTESPTRTSAD 26
R ++ T + V+ + +LL RP T ++ S NVVT RLR + S D
Sbjct: 50 RNADELDTSLDVLENSRLLSAIANHRRP----TSTTNSNSASNVVTRRLRGRASQANSHD 105
>AY071228-1|AAL48850.1| 326|Drosophila melanogaster RE26822p
protein.
Length = 326
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 113 PYLSLINWQPGQRCDRSFENR 51
P+ SL+ W+PG RC R NR
Sbjct: 268 PFASLV-WRPGPRCIRLLINR 287
>AF179590-1|AAD53181.1| 735|Drosophila melanogaster
ubiquitin-specific protease nonstopprotein.
Length = 735
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 229 DKVPDVKSRRHRQIATDVSVVRSQKLLDCFRTVTR 125
DK D ++ HR + ++ +L DC RTV +
Sbjct: 177 DKQRDRVAKGHRDTKNPLDATKNLRLSDCLRTVQK 211
>AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-PA
protein.
Length = 2232
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 205 RRHRQIATDVSVVRSQKLLDCFRTVTRPDRSLTCP*STGSRDNVVTARLRTESPTRTSAD 26
R ++ T + V+ + +LL RP T ++ S NVVT RLR + S D
Sbjct: 1984 RNADELDTSLDVLENSRLLSAIANHRRP----TSTTNSNSASNVVTRRLRGRASQANSHD 2039
>AE014297-2781|AAG22161.1| 355|Drosophila melanogaster CG5085-PA
protein.
Length = 355
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 113 PYLSLINWQPGQRCDRSFENR 51
P+ SL+ W+PG RC R NR
Sbjct: 237 PFASLV-WRPGPRCIRLLINR 256
>AY058719-1|AAL13948.1| 316|Drosophila melanogaster LD46256p
protein.
Length = 316
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 114 PLPVPNQLAAGTTL*PLV*EPSPRPEPLQTVGPI 13
PLPVP ++ TT P + P P PL + P+
Sbjct: 207 PLPVPLPVSTDTTPSPALETPYFTPPPLPELPPL 240
>AY051730-1|AAK93154.1| 550|Drosophila melanogaster LD25919p
protein.
Length = 550
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 238 EKQDKVPDVKSRRHRQIATDVSVVRSQKLLDCFRTVT 128
E +DK +V+ RR+++ S++ ++KL + ++ +T
Sbjct: 275 EMRDKYEEVRKRRYKEFMDGFSII-TRKLKEMYQMIT 310
>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin subunit
SMC4 protein.
Length = 1409
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 238 EKQDKVPDVKSRRHRQIATDVSVVRSQKLLDCFRTVT 128
E +DK +V+ RR+++ S++ ++KL + ++ +T
Sbjct: 1134 EMRDKYEEVRKRRYKEFMDGFSII-TRKLKEMYQMIT 1169
>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
homolog Gluon protein.
Length = 1409
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 238 EKQDKVPDVKSRRHRQIATDVSVVRSQKLLDCFRTVT 128
E +DK +V+ RR+++ S++ ++KL + ++ +T
Sbjct: 1134 EMRDKYEEVRKRRYKEFMDGFSII-TRKLKEMYQMIT 1169
>AE014296-973|AAF50767.2| 1929|Drosophila melanogaster CG5146-PA
protein.
Length = 1929
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 114 PLPVPNQLAAGTTL*PLV*EPSPRPEPLQTVGPI 13
PLPVP ++ TT P + P P PL + P+
Sbjct: 1820 PLPVPLPVSTDTTPSPALETPYFTPPPLPELPPL 1853
>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
protein.
Length = 1409
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 238 EKQDKVPDVKSRRHRQIATDVSVVRSQKLLDCFRTVT 128
E +DK +V+ RR+++ S++ ++KL + ++ +T
Sbjct: 1134 EMRDKYEEVRKRRYKEFMDGFSII-TRKLKEMYQMIT 1169
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,597
Number of Sequences: 53049
Number of extensions: 266840
Number of successful extensions: 750
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 24,988,368
effective HSP length: 59
effective length of database: 21,858,477
effective search space used: 437169540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -