Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_G02
(239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 26 4.1
Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81070-3|CAB02998.1| 408|Caenorhabditis elegans Hypothetical pr... 25 7.2
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 25 7.2
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 25 7.2
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 25 7.2
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 25 7.2
Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 25 9.5
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 25 9.5
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 129 PARTGPLPVPNQLAAGTTL*PLV*EPSPRPEPLQT 25
PAR P P + P +P PRP+P +T
Sbjct: 215 PARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRT 249
>Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical
protein R11A8.3 protein.
Length = 506
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 50 VPDQNLCRPWVPSLP 6
VPD + PW+P LP
Sbjct: 342 VPDNVILTPWIPQLP 356
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 133 LFENNPVVFDFLPRKHRSRFDGD 201
L+ + P F P +H +RFDGD
Sbjct: 3166 LYYDGPTCSLFKPIEHAARFDGD 3188
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 133 LFENNPVVFDFLPRKHRSRFDGD 201
L+ + P F P +H +RFDGD
Sbjct: 3166 LYYDGPTCSLFKPIEHAARFDGD 3188
>Z81070-3|CAB02998.1| 408|Caenorhabditis elegans Hypothetical
protein F26E4.4 protein.
Length = 408
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 11 RMGPTVCRGSGRGLGSQTSGHNVVPAAS*LGTG 109
R G T RG+GRG G++ G P + TG
Sbjct: 25 RGGSTSTRGAGRGRGARGRGAGPRPKQELIQTG 57
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 57 EPSPRPEPLQTVGPIL 10
E P PEP++T GPI+
Sbjct: 275 EERPLPEPVETSGPII 290
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 57 EPSPRPEPLQTVGPIL 10
E P PEP++T GPI+
Sbjct: 1046 EERPLPEPVETSGPII 1061
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 57 EPSPRPEPLQTVGPIL 10
E P PEP++T GPI+
Sbjct: 1043 EERPLPEPVETSGPII 1058
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 133 LFENNPVVFDFLPRKHRSRFDGD 201
L+ + P F P +H +RFDGD
Sbjct: 716 LYYDGPTCSLFKPIEHAARFDGD 738
>Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical
protein F32G8.5 protein.
Length = 294
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 137 NSHPPGQVPYLSLINWQPGQRCDRSFENRVP 45
N+ PP Q Y S + Q+C+ S N P
Sbjct: 62 NNSPPSQPTYFSRLARSTEQKCNCSQANNCP 92
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -1
Query: 188 RDRCFRGKKSKTTGLFSNSHPPGQVPYLSLINWQPGQRCDR--SFENRVP 45
R RC R KS +F N P P + I Q R FEN +P
Sbjct: 50 RSRCIRVVKSNLLLIFDNMQPEKYDPVQTCIELQGWFATSRPSGFENCLP 99
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -1
Query: 188 RDRCFRGKKSKTTGLFSNSHPPGQVPYLSLINWQPGQRCDR--SFENRVP 45
R RC R KS +F N P P + I Q R FEN +P
Sbjct: 50 RSRCIRVVKSNLLLIFDNMQPEKYDPVQTCIELQGWFATSRPSGFENCLP 99
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 175 SVVRSQKLLDCFRTVTRPDRSLTCP*STGSRDNVVTA 65
S+V + + D RTV +P SL C RD+ +A
Sbjct: 719 SIVPAPVVEDKSRTVEQPQASLLCETQDSCRDDFASA 755
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,074,136
Number of Sequences: 27780
Number of extensions: 127518
Number of successful extensions: 374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -