Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G01
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholin...    30   1.1  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    28   5.8  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholine
           receptor protein 25 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 253 PALWRGHIRCAYRRRSPAARWVGVD---GRGIPQDQYLHFL-RQRRHGHNAQL*TGIRET 420
           P  WR     +   +SPA  W       G  +P +Q    L  Q+ HGH +++   IRE 
Sbjct: 438 PPAWRSTTTTSQPPQSPAHLWWNATNRMGNRVPVEQIAQLLVLQQVHGHLSEINKHIRER 497

Query: 421 DASVQI 438
           + S +I
Sbjct: 498 EKSKKI 503


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 220 IPRFGWLETRLPALWR-GHIRCAYRRRSPAARWVGVDG 330
           I R G LE  LP  W+ G IR   R+ S  A W   DG
Sbjct: 124 IARLG-LEKMLPTGWKYGTIRVGLRKNSQGAPWYNTDG 160


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 137 LSHLFFWSLSVDPIILVFLPSDSYNILLLTGYVGAF 30
           L +L FW+L +D I  VFL    +  +   GY+G F
Sbjct: 72  LLNLKFWTLLIDLIYTVFLIPFVFYPIFAMGYIGIF 107


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -1

Query: 423 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 289
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -1

Query: 423 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 289
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -1

Query: 423 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 289
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -1

Query: 423 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 289
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 333 PSIDTDPPGSRRPPAISTSNMTSP*RR*SSFEP 235
           P+I T PP ++ PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


>Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 377 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARM-TALWIGN 550
           DM ++++ +++ + +  R  ++L + F +EM + +     ++PQQR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 158 FRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAG 295
           FRD ++  +E   GD D + +F++   +     R GE +F+ L  G
Sbjct: 99  FRDIMISTIEDKIGDFDESRQFMNKKAA-----RQGECVFECLYPG 139


>AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 377 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARM-TALWIGN 550
           DM ++++ +++ + +  R  ++L + F +EM + +     ++PQQR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,155
Number of Sequences: 27780
Number of extensions: 274229
Number of successful extensions: 1035
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)