Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F23
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   149   3e-37
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    33   0.024
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  149 bits (361), Expect = 3e-37
 Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEK 538
           TA  +FK+L KYRPET                     +   K+P  ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 539 KKAQLVVIAHDVDPIELVLFL 601
           KKA+LV+IA DVDPIELV+FL
Sbjct: 146 KKAKLVLIASDVDPIELVVFL 166


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 497 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 601
           LR G N  TK + +  ++ +V+A D +PIE++L L
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHL 66


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 290 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 391
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 303 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 401
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 362 TAKGLFKILEKYR 400
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,457
Number of Sequences: 5004
Number of extensions: 39584
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)