Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F22
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 213 1e-56
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 182 3e-47
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 116 2e-27
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 99 2e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 89 5e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 84 1e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 83 2e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 83 2e-17
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 79 3e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 73 2e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 71 1e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 2e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 2e-12
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 5e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 61 8e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 60 2e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 1e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 5e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 4e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 4e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 8e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 3e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 42 7e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.001
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 31 0.075
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 1.2
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.2
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 2.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 6.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.5
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 8.6
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 213 bits (520), Expect = 1e-56
Identities = 98/125 (78%), Positives = 116/125 (92%)
Frame = +1
Query: 133 LDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 312
++TN+D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQSGTGK
Sbjct: 10 IETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
Query: 313 TATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 492
TATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT VR+
Sbjct: 70 TATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
Query: 493 DMRQL 507
DM L
Sbjct: 130 DMAAL 134
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 182 bits (443), Expect = 3e-47
Identities = 87/126 (69%), Positives = 106/126 (84%), Gaps = 1/126 (0%)
Frame = +1
Query: 133 LDTNWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 309
L T+ D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQAQSGTG
Sbjct: 11 LTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTG 70
Query: 310 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 489
KTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V
Sbjct: 71 KTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVG 130
Query: 490 EDMRQL 507
D+++L
Sbjct: 131 NDIKKL 136
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 116 bits (279), Expect = 2e-27
Identities = 56/114 (49%), Positives = 77/114 (67%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 345
F+D LK ELL GI+ GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 346 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
+DT + Q LIL PTRELA Q +V LG H+N K GGT +R+D+ +L
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRL 159
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 99 bits (238), Expect = 2e-22
Identities = 47/102 (46%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 330
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 331 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 456
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 88.6 bits (210), Expect = 5e-19
Identities = 51/112 (45%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 345
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 346 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDM 498
I+ E L+L TRELA QI+ +L + + GG N+++DM
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDM 164
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 84.2 bits (199), Expect = 1e-17
Identities = 48/155 (30%), Positives = 82/155 (52%)
Frame = +1
Query: 22 MSHSSERRSEDWPEDSKNGPSKDQVYDGPPGMEPGGALDTNWDQVVETFDDMNLKEELLR 201
M+ S ++ +ED S N + E D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNSSSEKSSENNNG-DSQNNEAPKTFKELGVIDELCE 59
Query: 202 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 381
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 382 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 486
LAPTRELA QI + A+G + + +GG ++
Sbjct: 120 LAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDM 154
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 83.0 bits (196), Expect = 2e-17
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 339
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 340 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 486
+ QID + R AL+L PTRELAQQ+ V+ + L A C I NV
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL----EKLTAFCSKHIRFINV 124
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 83.0 bits (196), Expect = 2e-17
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 345
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 346 IDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 79.4 bits (187), Expect = 3e-16
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Frame = +1
Query: 163 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 342
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 343 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQEL 377
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 73.3 bits (172), Expect = 2e-14
Identities = 39/109 (35%), Positives = 64/109 (58%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 339
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 340 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 486
++ ALIL PTRELA QI + ALG +LN K +GG ++
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDM 115
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 70.9 bits (166), Expect = 1e-13
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 327
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 328 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQ 504
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 505 L 507
L
Sbjct: 208 L 208
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.9 bits (156), Expect = 2e-12
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 336
+ +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA F I +
Sbjct: 248 LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPL 307
Query: 337 LQQID--TSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 492
+ I + E A++LAPTRELAQQIQ + L +C + +GG E
Sbjct: 308 IIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEE 367
Query: 493 DMRQL 507
Q+
Sbjct: 368 QSFQM 372
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.5 bits (155), Expect = 2e-12
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 336
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 337 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLL 239
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.1 bits (144), Expect = 5e-11
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Frame = +1
Query: 58 PEDSKN-GPSK-DQVYDGPPGMEPGGALDTNWDQVVETFDDMNLKEELLRGIYAYGFEKP 231
PE+ KN P++ D++ G++ G + + V ++ L + + I + G+EKP
Sbjct: 385 PEELKNLSPAEVDELRASLDGIKIRGI---DCPKPVTSWSQCGLSAQTISVINSLGYEKP 441
Query: 232 SAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTR 396
++IQ +AI GRDVI A++G+GKT F + + + I ++ + A+I+ PTR
Sbjct: 442 TSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTR 501
Query: 397 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
ELA QI + LN + GG +++ + L
Sbjct: 502 ELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.3 bits (142), Expect = 8e-11
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Frame = +1
Query: 151 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 330
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 331 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDM 498
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 499 RQL 507
+L
Sbjct: 156 ERL 158
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 59.7 bits (138), Expect = 2e-10
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +1
Query: 142 NWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 321
N + V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT +
Sbjct: 116 NVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLS 175
Query: 322 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 486
+ + + I+ L+LAPTRELA QIQ+ G + GG
Sbjct: 176 YCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPR 235
Query: 487 REDMRQL 507
+R L
Sbjct: 236 GPQIRDL 242
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +1
Query: 163 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 342
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 343 QI---DTSIRECQALILAPTRELAQQIQKV 423
++ DT ALI+APTRELA QI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.2 bits (127), Expect = 5e-09
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 345
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 346 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMR 501
++ + + L+++PTRELA Q + + +L N K GG E R
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR 281
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.4 bits (120), Expect = 4e-08
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Frame = +1
Query: 97 YDGPPGMEPGGALDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 276
YD P GG ++ V F L LL+ I G+ +P+ +Q+ +I GR
Sbjct: 153 YDDIPVEVSGGDIEP-----VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Query: 277 DVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTREL 402
D++A AQ+G+GKTA F IL Q R +A LILAPTREL
Sbjct: 208 DLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267
Query: 403 AQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
QI + + A GG ++R +RQ+
Sbjct: 268 VCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQI 302
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.6 bits (103), Expect = 4e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +1
Query: 187 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 351
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 352 TSI-RECQALILAPTRELAQQIQK 420
+ +A+I+APTREL +QI +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 8e-06
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = +1
Query: 217 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 378
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 379 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVRED 495
IL+PTRELA QI + L + IGG + +RE+
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.7 bits (96), Expect = 3e-05
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Frame = +1
Query: 229 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 381
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 382 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDMRQL 507
+APTREL QQI V L + H C+ IGG + + ++
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARI 266
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.5 bits (93), Expect = 7e-05
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 357
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 358 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQL 507
+ + +++ PTREL Q+ K + A G ++R + QL
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQL 252
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 181 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 357
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 358 IRECQALILAPTRELAQQIQKVVI 429
+ A + PT+ LAQ +K +I
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLI 377
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 337 LQQIDTSIRECQALILAPTRELAQQIQK 420
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 31.5 bits (68), Expect = 0.075
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 133 LDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 279
LDTNW V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 136 DTNWDQVVETFDDMNLKEELLRGIYAYGF 222
D WD E FDD N + +GI+ F
Sbjct: 283 DIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 301 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 417
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 350 ILVFVNVKLLSWLQLESWRN 409
+L FVN LLSW L SW N
Sbjct: 49 VLYFVN-SLLSWCMLSSWFN 67
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 412 IQKVVIALGDHLNAKCHACIGGTNVRED 495
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 40 RRSEDWPEDSKNGPSKDQVYDGPPGMEPGGALDTNWDQVVE 162
+R E +P D + + VY+ PG + T+WDQ+ E
Sbjct: 361 KRIETFPADLDSLEEAEIVYETFPGWKVPTTGITHWDQMPE 401
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 2 HEAAVETCLIRLKEDRRIGRRILKMGLQR 88
+E +ET ++++K++ G R ++ G+QR
Sbjct: 1838 NELCIETFILKMKKEWYDGLRNIRFGIQR 1866
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 187 PSNSYHQRFPPLDPSLYPMHRPAPFQGVHH 98
PS+S Q+ P + SL+ + F G+HH
Sbjct: 372 PSSSQPQQTVPTNNSLFLLKNIPSFGGLHH 401
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 267 NAWHYCTLLDSRRFFKPVSIDSSEQFLLQIHIIKGFHHLI 148
++W+Y LDS+ PV + S+ + I G H I
Sbjct: 509 SSWYYFRFLDSKNSELPVGLASASSLMPVDIYIGGVEHSI 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,137
Number of Sequences: 5004
Number of extensions: 38378
Number of successful extensions: 153
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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