Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F21
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   1.6  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   1.6  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   2.8  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   8.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   8.6  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
 Frame = +3

Query: 39  SSANPAVVTNAAQVALDTPPAISRPNRP--NSLQ-VPLSLTPAQLHNNKALGNNK-IAGI 206
           SS  P    N  + A  +P A+ +  RP  NS+Q  P S+      +N +L + + ++  
Sbjct: 38  SSQQPPSTPNGKEAA--SPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKP 95

Query: 207 EISTPSNGI-----PFNFESLMEGGTGLTP--VHPHPCAHHQRAAPEVVSPDA 344
            +S+  N       P N  S     T   P  V P+P AHH       V P A
Sbjct: 96  VVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSA 148


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 39  SSANPAVVTNAAQVALDTPPAISRPNRPNSL 131
           +S N     NAA  A   PP + +P  PNSL
Sbjct: 145 TSTNSFYGNNAAATAPAPPPMMKKPAAPNSL 175


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 243 FESLMEGGTGLTPVHPHPCAHHQRAAPEVVSPDAHNSLVS 362
           + S  E GT     +PHPC  H     +V SP A  + VS
Sbjct: 123 YASPAEPGTAPLGTYPHPCV-HLTVNTDVSSPLAIKTYVS 161


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 66  SSPRQGWPTTTLFFSSCRIP 7
           +SP Q WPT + FF++  +P
Sbjct: 349 NSPWQLWPTLSKFFTNDNMP 368


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 39  SSANPAVVTNAAQVALDTPPAISRPN 116
           SSANPA+V+N        P   + P+
Sbjct: 101 SSANPAIVSNGGSPFYKNPVVANNPS 126


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 276 TPVHPHPCAHHQRAAPEVVSPDAHNSLVSFC 368
           +P   H C+++Q   P    P  HN L   C
Sbjct: 119 SPTSYHACSNNQSPFPHSHHPPLHNPLPVSC 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,245
Number of Sequences: 5004
Number of extensions: 21661
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)