Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F20
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 67 7e-12
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 28 3.7
08_02_1404 - 26834304-26834399,26834543-26834692,26834787-268348... 28 5.0
06_03_1248 + 28685911-28687719 28 5.0
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 28 5.0
01_05_0554 + 23221374-23222017,23222158-23222296 28 5.0
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 28 5.0
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 6.5
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 27 6.5
02_01_0130 - 938530-939990 27 8.7
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/59 (54%), Positives = 37/59 (62%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 418
GKVHGSLARAGKV+GQTP +QYNRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 89 SIGDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTELDLTVPLLGGKVHGSLAR 268
S+ I+ L L + E+ E+T CS + L + T L L P+L + SL +
Sbjct: 631 SLASIEECLELHFEAETVELTCENCSKFAQK--LNKSVIQTRLSLLPPVLVIHLKRSLLQ 688
Query: 269 AGKVKG 286
+ KVKG
Sbjct: 689 SDKVKG 694
>08_02_1404 -
26834304-26834399,26834543-26834692,26834787-26834864,
26834959-26835027,26835192-26835257,26835389-26835541,
26835665-26835928
Length = 291
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 270 ARARDPCTL-PPRRGTVRSSSVDESSDTRHESSRGALHI 157
A ++D C RRG S V+E S T E +G +H+
Sbjct: 85 AHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHV 123
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 128 DVESEEVTLSMCSAPLEDSCLVSELSSTELDLT--VPLLGGKVHGSLARAGKVKGQTP 295
DVE+E+ + S + PL + + E +STE T V G KV ++ R + +G+ P
Sbjct: 500 DVETEQASSSDPATPLNEEAINEEGTSTETGKTKKVAFKGSKVKTAMER--RPEGEQP 555
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 384 WTTFTNLLLYWILRLARPVLFFFFCCFST 298
W + +L WIL PVL FFC FS+
Sbjct: 66 WGSLVHLGDSWILAFWFPVLTEFFCAFSS 94
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 29 TKCSFTLEVITHVLDVNGQESIGDIKNRLRLLAD-VESEEVTLSMCSAP 172
+K SFT V V+D + D+K L D V SE+ T +C P
Sbjct: 107 SKNSFTAPVEAGVVDQKDESMCDDLKGSFMSLDDIVNSEDYTRVVCRGP 155
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 206 MKALTQDMSPQGAHCT*TESPPHSQHQQE 120
+K + D SPQG T S PH HQQ+
Sbjct: 30 LKRMQHDYSPQGTII--TTSTPHDHHQQQ 56
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/72 (20%), Positives = 37/72 (51%)
Frame = +2
Query: 23 EDTKCSFTLEVITHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSEL 202
++T L + + + + E D++ LRLL ++ S+++ + + +E S ++E+
Sbjct: 774 KETSVLVMLSLSSSLRSESQAEKYKDLRALLRLLTNICSKDLVGFLSDSSIEGSQDIAEV 833
Query: 203 SSTELDLTVPLL 238
+D+ PL+
Sbjct: 834 IYVGVDIVTPLI 845
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 56 ITHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTELDLTVP 232
I H L V QES G L+L ES + TL L + ++S++ + TVP
Sbjct: 402 IVHFLHVEIQESFGTYDGALQLNQPSESRQ-TLGSAGLSLHYANIISQIDNIVSRSTVP 459
>02_01_0130 - 938530-939990
Length = 486
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 276 LPARARDPCTLPPRRGTVRSSSV-DESSDTRHESS 175
LP+ +R CT P G+V V D + T HE+S
Sbjct: 32 LPSTSRISCTEPSNGGSVMELEVMDRNEQTYHENS 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,930
Number of Sequences: 37544
Number of extensions: 240403
Number of successful extensions: 703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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