Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F20
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    81   6e-16
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    30   1.1  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    30   1.1  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    30   1.1  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    30   1.1  
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    29   2.6  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    29   2.6  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 50/128 (39%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
 Frame = +2

Query: 47  LEVITHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSEL---SSTEL 217
           L+  TH LDV+   ++  IK  +        EE ++S  S  L +   + E    S + L
Sbjct: 8   LDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQIESLSTL 62

Query: 218 DLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGR 397
            +   LLGGKVHGSLARAGKV+ QTP                  +QY RR+VNV    G+
Sbjct: 63  SVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGK 122

Query: 398 RRGPNSNS 421
           +RGPNSNS
Sbjct: 123 KRGPNSNS 130


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 95  GDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
           G ++ +  L A++ES  +   + +  + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587

Query: 272 GKV 280
             V
Sbjct: 588 ASV 590


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 95  GDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
           G ++ +  L A++ES  +   + +  + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 272 GKV 280
             V
Sbjct: 786 ASV 788


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 95  GDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
           G ++ +  L A++ES  +   + +  + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853

Query: 272 GKV 280
             V
Sbjct: 854 ASV 856


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 95  GDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
           G ++ +  L A++ES  +   + +  + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 272 GKV 280
             V
Sbjct: 786 ASV 788


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 56  ITHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCSAPLEDSCLVSE 199
           +++   ++ ++++ DIKN +    D+      LS     LED C + +
Sbjct: 163 VSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  TKCSFTLEVITHVLDVNGQESIGDIKNRLRLLADVESEE 145
           T C     +I  V++V   + I DIKNR     D E+E+
Sbjct: 630 TYCDIVESLIREVVEVYADDQIEDIKNRYVYNTDSENED 668


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  TKCSFTLEVITHVLDVNGQESIGDIKNRLRLLADVESEE 145
           T C     +I  V++V   + I DIKNR     D E+E+
Sbjct: 630 TYCDIVESLIREVVEVYADDQIEDIKNRYVYNTDSENED 668


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 351 ILRLARPVLFFFFCCFSTLGVWPLTLPA 268
           IL+ ++PV +F       + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284


>Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical
           protein C29F3.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 330 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 241
           ++F FFC FS  G  P+T P    +P  +P
Sbjct: 6   IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,435,451
Number of Sequences: 27780
Number of extensions: 192345
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)