Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F19
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.44
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 2.3
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 3.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 4.1
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 5.4
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 25 5.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.2
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 24 9.5
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 24 9.5
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.44
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = +1
Query: 64 KLISMANETPESDFSIECFQNYSAPEVFVQGLAGMVDQTDVEVIIRAQK-NMLQRFEKTT 240
KL S T S + +A + V+G G++D +++ QK N+L ++
Sbjct: 86 KLGSSEGSTASSALPLTPRSPSNASWLLVRG--GLLDSPILDINSVTQKSNLLNELKQVR 143
Query: 241 EMLTNCNHLSA--SRLRAASIEFKKHTQLL--LDMKKDLEFISKKIRAIKTKLSTQYPEA 408
L H + S ++S + K+T + L ++D+ + KK+ +++ S + EA
Sbjct: 144 SKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEA 203
Query: 409 YKLT 420
Y L+
Sbjct: 204 YDLS 207
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 103 FSIECFQNYSAPEVFVQGLAGMVDQTDVEVIIRA 204
+ +E FQ+ S P V LAG + D+ V I A
Sbjct: 52 YGLEVFQDSSKPNEVVLSLAGKIILIDITVPINA 85
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 307 KHTQLLLDMKKDLEFISKKIRAIKTKLSTQYPEAYKL 417
K TQLL K+D +FI+ + + T + Q E KL
Sbjct: 635 KLTQLLKTQKEDADFITNQYQNASTFAAEQSKEVAKL 671
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 304 KKHTQLLLDMKKDLEFISKKIRAIKTKLST 393
K+HT+ + ++KDLE +K + +L T
Sbjct: 879 KEHTEKISSLEKDLEAATKTASTLSKELKT 908
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 123 KLLSA*SVRARFSWHGRPDRRRSNHPSSEEHVATF*KDNR 242
++L+A + + +H RP+ R HP + + + NR
Sbjct: 435 QVLAAQQAKGQEGYHNRPNNNRGGHPRGGGNRGGYRQSNR 474
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 139 EVFVQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHT 315
++F+ L +VD I+AQK+ + R K +M+T+ NH E KK +
Sbjct: 290 DLFI-ALRQLVDSKFKSYGIKAQKHAINRISKLGKMITS-NHAEEKLTTIPITEAKKES 346
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 163 GMVD-QTDVEVIIRAQKNMLQRFEKTTEMLTNCNHLS 270
G +D TD+ + R +L+ FE T +TN N LS
Sbjct: 70 GPIDPNTDINQVPREPYRLLKEFEWATIDVTNDNELS 106
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 7.2
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +1
Query: 205 QKNMLQRF---EKTTEMLTNCN----HLSASRLRAASIEFKKHTQLLLDMKKDLEFISKK 363
+ N+ Q++ EKT EM+ + HL S + + LLD+ K +E + ++
Sbjct: 966 KSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEE 1025
Query: 364 IRAIKTKLSTQYPEAYK 414
+ +L+ Q +A +
Sbjct: 1026 KESSSKELAKQLEDAVR 1042
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 106 KNHFLVFHWPYLLILDSEIVSRVIRIY 26
++HF F WPY + S +I++Y
Sbjct: 606 ESHFTDFFWPYSQFYFCILSSAIIKMY 632
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 166 MVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNH 264
+VDQT+ + +++ + T +LTN NH
Sbjct: 174 LVDQTEKFAASHPDRLQIKKNARVTRLLTNPNH 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,675
Number of Sequences: 5004
Number of extensions: 28968
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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