Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F19
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97006-4|AAC47964.1| 140|Caenorhabditis elegans Hypothetical pr... 85 2e-17
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 30 0.91
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 30 0.91
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 28 2.8
AL117204-2|CAB76734.1| 272|Caenorhabditis elegans Hypothetical ... 27 4.8
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 6.4
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 6.4
U97010-2|AAB52319.1| 198|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical ... 27 8.4
>U97006-4|AAC47964.1| 140|Caenorhabditis elegans Hypothetical
protein C13F10.2 protein.
Length = 140
Score = 85.0 bits (201), Expect = 2e-17
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +1
Query: 124 NYSAPEV--FVQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASI 297
++ PE + L +D+ ++ II Q+ L+RFEKT EML NC L R+ A
Sbjct: 27 SFDMPETPHLIDSLTSQIDEFTIQSIIDTQRQSLKRFEKTNEMLMNCAQLGDRRIEKAKR 86
Query: 298 EFKKHTQLLLDMKKDLEFISKKIRAIKTKLSTQYPEAY 411
+ H + +L MK DLEFI KKIR KT LS++YPE Y
Sbjct: 87 DSVGHKETILQMKTDLEFIFKKIRMFKTVLSSKYPEVY 124
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.9 bits (64), Expect = 0.91
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHTQ 318
+F G+A + TDV E R QK + + F+KTTE L + ++ + + K+H
Sbjct: 1661 IFASGIATREENTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEVDNSDVKEHRT 1719
Query: 319 LLLDMKKDLEFISK 360
+++ D FI +
Sbjct: 1720 SAVNIDLDDVFIQR 1733
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHTQ 318
+F G+A TDV E R QK + + F+KTTE L + ++ + + K H
Sbjct: 2024 IFASGIATREKNTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEGDNSDVKDHKA 2082
Query: 319 LLLDMKKDLEFISK 360
+++ D FI +
Sbjct: 2083 SAVNIDLDDVFIQR 2096
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.9 bits (64), Expect = 0.91
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHTQ 318
+F G+A + TDV E R QK + + F+KTTE L + ++ + + K+H
Sbjct: 1661 IFASGIATREENTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEVDNSDVKEHRT 1719
Query: 319 LLLDMKKDLEFISK 360
+++ D FI +
Sbjct: 1720 SAVNIDLDDVFIQR 1733
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHTQ 318
+F G+A TDV E R QK + + F+KTTE L + ++ + + K H
Sbjct: 2024 IFASGIATREKNTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEGDNSDVKDHKA 2082
Query: 319 LLLDMKKDLEFISK 360
+++ D FI +
Sbjct: 2083 SAVNIDLDDVFIQR 2096
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 IECFQNYSAPEVFVQGLAGMVDQTDVEVIIRAQK--NMLQRFEKTTEMLT 252
IEC N+S + L ++D+ E R Q+ N Q FE +E LT
Sbjct: 558 IECILNFSESRILPYDLKELMDRVLDEYFPRIQQHINKAQTFENISEYLT 607
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 28.3 bits (60), Expect = 2.8
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 73 SMANETP----ESDFSIECFQNYSAPEVF-VQGLAGMVDQTDVEVIIRAQKNMLQRFEKT 237
++ANET ++ F + EV + G G+ T ++++ QK L F+K
Sbjct: 89 NLANETTHRYSQNSFKLHRLPTPRCGEVLGLVGTNGIGKSTALKILAGKQKPNLGNFQKE 148
Query: 238 TEMLTNCNHLSASRLR 285
E T NH S L+
Sbjct: 149 QEWTTIINHFRGSELQ 164
>AL117204-2|CAB76734.1| 272|Caenorhabditis elegans Hypothetical
protein Y116A8C.3 protein.
Length = 272
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 181 DVEVIIRAQKNMLQRFEKTTEMLTNCNHLSASRLRAASIEFKKHTQLLLDMKKDLEFISK 360
D E +I Q+ + FE+ + N R A+ FK HT+ K E I
Sbjct: 101 DAECLIDFQQQFGREFEQAITKVGE-NPSDVGRKLIANHSFKIHTRKSSKQKAHREPIQP 159
Query: 361 KIRAIK 378
KI+A+K
Sbjct: 160 KIQAVK 165
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 175 QTDVEVIIRAQKNMLQRFEKTTEMLTNCNHLS 270
+ D I++A KN+++ FEK E++ S
Sbjct: 554 EQDRSFIVKAMKNIIENFEKAIEIIEKATQTS 585
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 241 EMLTNCNHLSASRLRAASIEFKKHTQLLLDMKKDLEFISKKIRAIKTKLSTQ 396
EM+ L +R + + + KK Q +DM+K + S K K KL+T+
Sbjct: 824 EMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTK 875
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 241 EMLTNCNHLSASRLRAASIEFKKHTQLLLDMKKDLEFISKKIRAIKTKLSTQ 396
EM+ L +R + + + KK Q +DM+K + S K K KL+T+
Sbjct: 824 EMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTK 875
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 241 EMLTNCNHLSASRLRAASIEFKKHTQLLLDMKKDLEFISKKIRAIKTKLSTQ 396
EM+ L +R + + + KK Q +DM+K + S K K KL+T+
Sbjct: 824 EMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTK 875
>U97010-2|AAB52319.1| 198|Caenorhabditis elegans Hypothetical
protein W08A12.3 protein.
Length = 198
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 212 TCCNVLKRQQRC*QTVIIYQQVVSELHQLSLKNIHSC 322
TCC +L +++ + + V E+H+L +N SC
Sbjct: 34 TCCEMLSHRRKKRNVEKLPEDYVDEIHRLLHRNQKSC 70
>AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical
protein H37A05.1 protein.
Length = 823
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 188 STSVWSTMPAKPCTNTSGAE*F*KHSIEKSLSGVSLAILIN 66
STS WS+ + T+T+ E K +E+ G+SL L+N
Sbjct: 362 STSRWSSWFWRSSTSTADEEQKEKEKLEQEEQGISLDELLN 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,811,713
Number of Sequences: 27780
Number of extensions: 156802
Number of successful extensions: 475
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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