Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F17
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    57   8e-10
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    28   0.41 
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   2.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   3.8  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 57.2 bits (132), Expect = 8e-10
 Identities = 22/56 (39%), Positives = 41/56 (73%)
 Frame = +2

Query: 8   GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALN 175
           GA L N++++ EAV +Y+ A++L+P ++R R N+ ++ +NLG +  AA+H L A++
Sbjct: 479 GAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSNMAVSNINLGYFEDAAKHLLAAID 534


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 27/93 (29%), Positives = 46/93 (49%)
 Frame = -2

Query: 360 YNCQLFISKNLLISVRFLSSTNFATSCSPINEQTIRKVVHMLEEVESVFVESGYIPLALY 181
           +N + F  K+ L  V F    ++   CS IN++ I + +  L  +++   ++    + L 
Sbjct: 344 HNLEKFNLKSQLDKVVFHLVPDYKHRCSLINDKEIEEEIAYL--LQACLSKNLLSEIDLP 401

Query: 180 C*LSATKKCSAACL*APKFIQVIPTLYLALINP 82
             L+  KK S     A KF+++I T   ALINP
Sbjct: 402 IILANLKKLSKER--AKKFLRLILTSKTALINP 432


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 41  EAVEAYHEALNLEP-GFIRARYNVGITCMNLGAY 139
           E  EAYH+AL L P   +  R N    C   G +
Sbjct: 417 EYAEAYHKALTLSPQEQLEMRINARSACARFGEH 450


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 278 EHDVAKLVDERNLTEINKFFEMNN*QLYLYN 370
           EH +  L DER L   NK F   N   Y YN
Sbjct: 29  EHSLKSLQDERTLNYPNKQFNSENPSSY-YN 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,736
Number of Sequences: 5004
Number of extensions: 22318
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)