Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F17
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 53 8e-08
03_02_0459 + 8649448-8651994 37 0.004
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 37 0.004
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064... 33 0.054
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 30 0.67
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 29 1.5
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 28 2.0
10_08_0277 - 16437023-16437304,16437687-16437833,16440169-164403... 28 2.7
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677... 27 3.6
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 27 4.7
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 27 6.2
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 52.8 bits (121), Expect = 8e-08
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALNQQYK 187
GAT ANS +S +A+ AY +AL+L+P ++RA N+GI+ N G Y + +++ A+ K
Sbjct: 684 GATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPK 743
Query: 188 A 190
A
Sbjct: 744 A 744
>03_02_0459 + 8649448-8651994
Length = 848
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALN 175
G+ L + AV+ + +A++L+PG + A YN+G M+ G + +AAE + L+
Sbjct: 425 GSALHAIGDDDRAVQEFQKAIDLKPGHVDALYNLGGLNMDAGRFVRAAEMYTRVLS 480
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 41 EAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALN 175
+A E H+AL L P A N+G G YR+A H+L ALN
Sbjct: 172 QAAECCHQALALNPHLADAYCNLGDVLKAQGLYREAYSHYLDALN 216
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVG 112
G L ++ R+EEA+ Y L L+P +A N+G
Sbjct: 334 GNALKDAGRNEEAISCYQTCLALQPSHPQALTNLG 368
>02_05_0780 -
31705605-31705754,31705858-31706191,31706306-31706478,
31706615-31706810,31707864-31708777
Length = 588
Score = 33.5 bits (73), Expect = 0.054
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +2
Query: 2 HEGATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALN 175
++ A LA R EAV EA+ ++P + RA + +G + LG +A HF + N
Sbjct: 264 NKAAALAALGRLIEAVGDCREAVRIDPSYGRAHHRLGGLYLRLGEPDKAIHHFKQSAN 321
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 29.9 bits (64), Expect = 0.67
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGI 115
G +L + +EE ++ Y EAL ++ + A YN+G+
Sbjct: 175 GTSLKLAGNTEEGIQKYCEALEVDSHYAPAYYNLGV 210
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 5 EGATLANSDRSEEAVEAYHEALNLEP 82
EGA L R EEA A++E + LEP
Sbjct: 369 EGAALRLLQRFEEAANAFYEGVQLEP 394
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLGAYRQAAEHFLVALN 175
G L ++ R EEA+ Y L L+ +A N+G M AA + A++
Sbjct: 357 GNALKDAGRVEEAINCYRSCLALQANHPQALTNLGNIYMEWNLISAAASFYKAAIS 412
>10_08_0277 -
16437023-16437304,16437687-16437833,16440169-16440342,
16441192-16441266,16441653-16441805,16442488-16442751
Length = 364
Score = 27.9 bits (59), Expect = 2.7
Identities = 8/35 (22%), Positives = 23/35 (65%)
Frame = +2
Query: 8 GATLANSDRSEEAVEAYHEALNLEPGFIRARYNVG 112
G + ++ +++++ + +A+ L+PG++ A N+G
Sbjct: 277 GVSYKRDNKLDKSIQQFEKAVELQPGYVTAWNNLG 311
>05_02_0116 +
6773659-6774437,6775103-6775298,6775381-6775565,
6775746-6776079,6776174-6776378,6776692-6776834,
6777081-6777233
Length = 664
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 2 HEGATLANSDRSEEAVEAYHEALNLEPGFIRARYNVGITCMNLG 133
+ A L R EAVE EA+ L+P + RA + + LG
Sbjct: 219 NRAAALIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRLG 262
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 35 SEEAVEAYHEALNLEPGFIRARYNV--GITCMNLGAYRQAAEHFL 163
S A ++ +A G I AR V G TC+N G Y +A+ +F+
Sbjct: 101 SNMAPDSASQAFISTDGVINARARVLGGGTCINAGFYSRASSNFI 145
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 5 EGATLANS-DRSEEAVEAYHEALNLEPGFIRARYNVG 112
+ A AN R E+A Y E L +PG ++AR G
Sbjct: 457 KAAECANQLQRYEQAYHRYREILEYDPGNVKAREMTG 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,978,486
Number of Sequences: 37544
Number of extensions: 125347
Number of successful extensions: 255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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