Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F14
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   2.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   4.1  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   4.1  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.2  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.5  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
 Frame = +3

Query: 258 NIPASNVVDIY----RKKYDESSD----ESFIIKIYQLIELACWPD 371
           NIP S V DIY     K +D++SD    +  +I + +L++L C  D
Sbjct: 500 NIPNSMVDDIYTELSSKNHDDTSDSITVDEAVICLERLVDLVCHQD 545


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 15  SKDTMNNNSNEATNPLGNREQTKANQIPKFI 107
           + D  NNN+N+A     N E   + QI ++I
Sbjct: 686 ASDNQNNNNNDANALAENSESQHSTQIERYI 716


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 315 PNSRHTFYDKYLRHWMLVYCKHPSIIC 235
           P+ +++F+D YL+ +   Y  H +I+C
Sbjct: 299 PSDQYSFHDAYLQSYTHRYPVHRAIMC 325


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 60  LGNREQTKANQIPKFIQSKVIILNQM---ENLIEKHCQKQ 170
           L  RE+ + + IP F Q  + +  QM   E  +EKH  ++
Sbjct: 412 LSEREEDECSNIPSFDQQPLCLYIQMALCEETLEKHINRR 451


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 126 LNQMENLIEKHCQKQKPLFLRVCDGELRLRLSHLFHGKLLKDVYNIPASNVVDIYRKKYD 305
           L  + +++E    K   +      G+L L LS +   K      N      + IY + Y+
Sbjct: 547 LANLHSILEDRASKYSSML--ALQGKLDLVLSQIAFRKAGGSKDNAEDEEPISIYYEGYE 604

Query: 306 ESSDES 323
           ES DE+
Sbjct: 605 ESMDEA 610


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +3

Query: 15  SKDTMNNNSNEATNPLGNREQTKANQIPKFIQSKVIILN------QMENLIEKHCQKQKP 176
           SK+++  +   + NP   R + +AN I + + ++   LN      Q   L  K C    P
Sbjct: 290 SKESLAMSEASSINPEYKRIKKRANLIKELVTTEAAYLNDLIAIQQSYGLRVKECSALNP 349

Query: 177 LFLRVCDGELRLRLSHL--FHGKL 242
           +  +   G++   L+    FH +L
Sbjct: 350 VDAQTVFGDIESLLTFTVEFHSRL 373


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 282 DIYRKKYDESSDESFIIKIYQ 344
           D   K+  ESSD++F+ KIY+
Sbjct: 23  DFQNKQGIESSDDAFLSKIYE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,710
Number of Sequences: 5004
Number of extensions: 40362
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)