Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F14
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1171 - 31455136-31455482,31455805-31458982                       30   1.0  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    28   4.1  
11_04_0112 - 13585293-13585988,13586095-13586619                       27   7.2  
10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462...    27   7.2  
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826...    27   9.5  
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325...    27   9.5  

>04_04_1171 - 31455136-31455482,31455805-31458982
          Length = 1174

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 261 YCKHPSIICHGTNAIVSIVILRRKLSGTMASVSGNVSLL 145
           +C    + C G   + SI +   KL G ++   GN+S L
Sbjct: 77  HCNWTGVACDGAGQVTSIQLPESKLRGALSPFLGNISTL 115


>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
            18456292-18456360,18456528-18456605,18456703-18456789,
            18456881-18456931,18457021-18457092,18457177-18457304,
            18458194-18458275,18458705-18458754,18459043-18459096,
            18459586-18459675,18459903-18459983,18460443-18460538,
            18460960-18461022,18461313-18461402,18461630-18461698,
            18462051-18462291
          Length = 1082

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +3

Query: 72   EQTKANQIPKFIQSKVIILNQMENLIEKHCQKQKPLFLRVCDGELR--LRLSHLFHGKLL 245
            E+ K  ++   +  K+ ++ + + L+    +K++  +  VC    +  L  SH+    L 
Sbjct: 804  EKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEE--YTCVCSKFEKDGLLCSHILKIMLH 861

Query: 246  KDVYNIPASNVVDIYRKK-YDESSD 317
             ++  IP   ++D +RKK Y E SD
Sbjct: 862  LNIMKIPEKYIIDRWRKKDYKEKSD 886


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 135 MENLIEKHCQKQKPLFLRVCDGELRLRLSHLFHGKLLKDVYNIPASNVVDIYRKKYDESS 314
           M  L E+  +   PL L V  GE ++    L+ GK+   + N       D+  K     +
Sbjct: 115 MHILNEQDNEGNTPLHLAVIAGEYKVISKLLYSGKVQNHIMNYAGHTPYDLAEKSTGFYT 174

Query: 315 DESFIIKIY 341
               I+K+Y
Sbjct: 175 MVRIILKLY 183


>10_08_0756 +
           20344406-20344590,20345811-20345880,20346229-20346291,
           20348390-20348521,20348604-20348737,20351245-20351323,
           20353050-20353111,20353211-20353310,20353448-20353489,
           20353605-20353646,20353959-20354150
          Length = 366

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +3

Query: 39  SNEATNPLGNREQTKANQIPKFIQSKVIILNQMENLIEKHCQKQKPLFLRVCDGELRLRL 218
           S+ A  P G   + + +   KF+  + +I N++ + +E      KP    +  GE+ L L
Sbjct: 71  SSLAPTPAGEWREWREDLSRKFLSLQAMICNELSSNVE-----LKPFGWALAQGEVELEL 125

Query: 219 SHLFHGKLLKDVYNI 263
             +     +K++YN+
Sbjct: 126 CRM-GPMYIKNIYNL 139


>10_05_0026 +
           8262237-8262899,8263300-8263509,8263599-8265480,
           8265508-8265704,8275672-8275824
          Length = 1034

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +3

Query: 3   TRGQSKDTMNNNSNEATNP-----LGNREQTKANQIPKFIQSKVIILNQMENLIEKHCQK 167
           + G   +  NNN+N   NP     L  + Q   N + + +Q++   LNQ  N      Q 
Sbjct: 227 SNGNGPNNNNNNNNNGENPTLAQVLAQQAQL-MNMMMQQLQNQQNQLNQGNNNAPPP-QN 284

Query: 168 QKPLFLRVCDGELRLRLSHLFHG 236
           +   FLR  D E     SH  HG
Sbjct: 285 KLAEFLRCTDQEKVSFASHQLHG 307


>04_04_1503 +
           34031540-34031562,34031682-34032212,34032417-34032571,
           34032929-34033020,34033916-34034419
          Length = 434

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 258 NIPASNVVDIYRKKYDESSDESFIIKIYQLIELACWPDFETME 386
           N     +V++ RKK +E++ ESF ++  +++   C P  + +E
Sbjct: 241 NTTLDKLVNLLRKKDEENNAESFRLEEGRVMHTLCVPHVDLVE 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,825
Number of Sequences: 37544
Number of extensions: 214033
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)