Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F14
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine re...    28   4.9  
Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
           protein C34G6.1 protein.
          Length = 1768

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +3

Query: 192 CDGELRLRLSHLFHGKLLKDVYNIPASNVVDIYRKKYDESSDESFIIKIYQLIELACWPD 371
           C GEL L +      +L++DV  I  +N++ +YRK Y+ES        I + +E AC   
Sbjct: 275 CVGELCLMIKQT---RLVEDVKKI-VTNMIPLYRKSYNES--HMITQGICRFLEAACVD- 327

Query: 372 FETMEGNVYLEE 407
            ET     YLE+
Sbjct: 328 -ETCPLEPYLED 338


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +3

Query: 195 DGELR-LRLSHLFHGKLLKDVYNIPASNVVDIYRKKYDE---SSDESFIIKIYQLIELAC 362
           D E+  ++ S LF G    D+  +P     DI ++  D+     DE F    +  + L  
Sbjct: 64  DAEIESMQNSLLFEG----DIMGVPEIEKSDILKRLRDDPLLDEDEIFRKPFHSALNLVT 119

Query: 363 WPDFETMEGNVYLEEYDGMNDENNTNV 443
           +PD    EG V     +GM ++  T +
Sbjct: 120 YPDKLWPEGQVPYMLEEGMTNDQRTAI 146


>AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein38 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 224 FVPWQIIEGCLQYTSIQCRRYLS*KV*REFG 316
           FV WQ I   L Y S++ R+Y+  ++ R +G
Sbjct: 142 FVAWQTICWFLGYASVEMRQYVREEIRRTYG 172


>Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical
           protein K01C8.9 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = +3

Query: 45  EATNPLGNREQTKANQIPKFIQSKVIILNQMENLIEKHCQK 167
           +A +PLG+R ++  +Q+ K  +  V++LN+++ +  ++ QK
Sbjct: 156 DARDPLGSRSKSVEDQVLKGGKRLVLLLNKIDLVPRENVQK 196


>U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical
           protein D1005.6 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = +3

Query: 207 RLRLSHLFHGKLLKDVYNIPASNVVDIYRKKYDESSDESFIIKIYQLIELACWPDFETME 386
           +L+L+  F  KL    ++    N+  + +KK+D+   E+F IK  ++     + +F+  E
Sbjct: 34  KLKLNKKFL-KLKPYFFSYTVDNMPKVSKKKFDKIFTENFCIKKKKMQNFQFFFNFKCFE 92

Query: 387 GNVYLEEYDGMNDENNTNVVIN 452
            +  LE    M+ E  T  ++N
Sbjct: 93  KSENLE----MSAEGRTVTMVN 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,580
Number of Sequences: 27780
Number of extensions: 210624
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)