Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F12
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    29   0.31 
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    24   9.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   9.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    24   9.0  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 249 FTHNRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQ 127
           FT+   ++  P  +LS  Y  FVS    + N +KQE  +QQ
Sbjct: 37  FTNPYFLDLEPSSMLSEGYYGFVSQPSGSSNSNKQEKNVQQ 77


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 241 QSWH*QLAVVFVKCHVFVIRFSENKCP 161
           Q W+  L +V     +F +R+ + +CP
Sbjct: 533 QWWYATLFIVVFGLTIFTVRYYDTQCP 559


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 146  CFDSFRALIFTETNDKYV 199
            C DSF+ L    T D Y+
Sbjct: 1002 CLDSFKLLYLPRTEDSYI 1019


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 373 SFLMYSSMQTLCQRC 329
           SFL ++S+++LC +C
Sbjct: 340 SFLSFNSLKSLCSKC 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,410
Number of Sequences: 5004
Number of extensions: 24551
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)