Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F12
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041           32   0.17 
07_01_0234 + 1715338-1718233,1718351-1718760                           30   0.68 
04_04_0649 + 26949063-26949232,26949398-26949518,26949610-26949846     29   0.90 
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    27   6.3  

>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
          Length = 86

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 83  VRQRINEKLNHTSF----SCCMVDSCFDSFRALIFTETNDKYVTLNKNNGQLLMPRLCVK 250
           ++ +I+E+ ++T      SCC  ++C DS      T+  D++ T+  +  Q+   ++C  
Sbjct: 11  MKPKISERTSNTKATMGTSCCSYNTCEDSTIKCTMTQFEDQFSTIKPDGIQVRCRKMCCC 70

Query: 251 CA 256
           C+
Sbjct: 71  CS 72


>07_01_0234 + 1715338-1718233,1718351-1718760
          Length = 1101

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 261 SHAHFTHNRGINSWPLFLLSVTYLSFVSVKISALNES 151
           S  H +HN+    +P F+ ++T LSF+ VK ++L  S
Sbjct: 362 SRLHLSHNQLTGPFPAFVGNLTELSFLVVKSNSLTGS 398


>04_04_0649 + 26949063-26949232,26949398-26949518,26949610-26949846
          Length = 175

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 104 KLNHTSFSCCMVDSCFDSFRALIFTETNDKYVTLNKNNGQL 226
           +LNH SF C  V+   D +R ++  E   +  +LN N   L
Sbjct: 18  RLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWL 58


>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 183 VSVKISALNESKQESTIQQLKDV*FNFSLILWRTHYRR*LPS 58
           ++V+++AL  S  E  IQQ+ ++   FS+   RT Y R  PS
Sbjct: 348 ITVELTALILSIDEIQIQQILNLCDYFSICALRTKYGRYRPS 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,737,311
Number of Sequences: 37544
Number of extensions: 144609
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)