Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F12
         (374 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein.               29   3.7  
BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein.       29   3.7  
AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit S...    29   3.7  
AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant...    29   3.7  
AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant...    29   3.7  

>D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein.
          Length = 2067

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 240  NRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQLK 121
            N+G+  WP + L  T    + V++S      ++  IQQL+
Sbjct: 1241 NKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLR 1280


>BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein.
          Length = 2002

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 240  NRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQLK 121
            N+G+  WP + L  T    + V++S      ++  IQQL+
Sbjct: 1228 NKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLR 1267


>AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit
           SP-R210 alphaS protein.
          Length = 1581

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 240 NRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQLK 121
           N+G+  WP + L  T    + V++S      ++  IQQL+
Sbjct: 770 NKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLR 809


>AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant 2
            protein.
          Length = 1715

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 240  NRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQLK 121
            N+G+  WP + L  T    + V++S      ++  IQQL+
Sbjct: 904  NKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLR 943


>AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant 1
            protein.
          Length = 2046

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 240  NRGINSWPLFLLSVTYLSFVSVKISALNESKQESTIQQLK 121
            N+G+  WP + L  T    + V++S      ++  IQQL+
Sbjct: 1220 NKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLR 1259


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,370,075
Number of Sequences: 237096
Number of extensions: 770044
Number of successful extensions: 1299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)