Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F12
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    26   7.6  
AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical ...    26   7.6  

>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 267 ITSHAHFTHNRGINSWPLFLLSVTYLSF 184
           I +H    H R +N+W   LL V Y +F
Sbjct: 219 IDNHRTLAHRRRVNNWKDVLLLVRYENF 246


>AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical
           protein Y34F4.5 protein.
          Length = 191

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 373 SFLMYSSMQTLCQRCVSTQYVLSICETKLHATARAYNLTRTLYAQSWH*QLAVVFV 206
           SF +Y+++  +CQ  V+  Y   + ETK+     +  +    Y   W   L VV +
Sbjct: 60  SFALYTTV--VCQFMVALMYGFIVYETKIKKRQYSKEILSLFYYFKWFFLLIVVLI 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,967,557
Number of Sequences: 27780
Number of extensions: 143771
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)