Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F12
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   2.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   2.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   8.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   8.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.3  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 367 LMYS--SMQTLCQRCVSTQYVLSICETKLHAT 278
           L+YS    Q LC + V   YV+ +  T  H T
Sbjct: 10  LLYSVAMSQRLCIQLVVGPYVIGLMNTMTHTT 41


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 367 LMYS--SMQTLCQRCVSTQYVLSICETKLHAT 278
           L+YS    Q LC + V   YV+ +  T  H T
Sbjct: 9   LLYSVAMSQRLCIQLVVGPYVIGLMNTMTHTT 40


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 300 ARRSYMRRREHITSHAHFTHNRGINS 223
           A+ + ++ R++  +H  FT++  +NS
Sbjct: 481 AKNTMIKARQYRLNHKPFTYHIVVNS 506


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 217 RPTVNATIVRKVCV 258
           RP VN + V +VC+
Sbjct: 45  RPVVNTSDVLRVCI 58


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 217 RPTVNATIVRKVCV 258
           RP VN + V +VC+
Sbjct: 45  RPVVNTSDVLRVCI 58


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 300 ARRSYMRRREHITSHAHFTHNRGINS 223
           A+ + ++ R++  +H  FT++  +NS
Sbjct: 481 AKNTMIKARQYRLNHKPFTYHIVVNS 506


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 300 ARRSYMRRREHITSHAHFTHNRGINS 223
           A+ + ++ R++  +H  FT++  +NS
Sbjct: 107 AKNTMIKARQYRLNHKPFTYHIVVNS 132


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 239 LCVKCACEVICSRRRM*LRLANT*YVL 319
           +C    CEVIC   +  L+  NT + L
Sbjct: 282 VCKWPGCEVICEDYQAFLKHLNTEHTL 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,975
Number of Sequences: 438
Number of extensions: 1616
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)