Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F11
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.4  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   5.5  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   5.5  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   5.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 69  PADAAQKIKFVQSSKSVTSTQITKP 143
           P D    I F  ++   TSTQIT P
Sbjct: 351 PTDTTNSISFANTTPENTSTQITSP 375


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 170 TLHYNFSHDRFRNLGRGNRFTTLNKFNLLCRI 75
           T+  NF  D F  +  GN+  TLN+  +  +I
Sbjct: 343 TVGSNFEVDHFLKISVGNKLWTLNRVEIPFKI 374


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 253 ALLAELIAGIIFVDTTAWSLTTSIPDVLPCTITLAMTGFVIWVEVT 116
           ALLA  + G IF   T   L   +  V+P ++  A TG  I + +T
Sbjct: 155 ALLAVFVEGFIFTGLTVIGLRQWLARVIPASLKFA-TGAGIGLYLT 199


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 352 FLLNLKPSFVGDPNNTLFRAN 290
           + LN K S + + N+T+F+AN
Sbjct: 193 YALNTKKSKISNENDTIFKAN 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,251
Number of Sequences: 5004
Number of extensions: 33311
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)