Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F11
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    30   0.51 
AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf (tbp-asso...    27   3.6  
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    27   4.8  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z81107-1|CAB03225.1|  258|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical p...    26   8.4  
U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine rece...    26   8.4  
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    26   8.4  

>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 259 YCALLAELIAGIIFVDTTAWSLTTSIP 179
           Y ALL EL+A I   D +  +LTTS+P
Sbjct: 703 YAALLRELVADITLSDNSQSTLTTSLP 729


>AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 4
           protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 253 ALLAELIAGIIFVDTTAWSLTTSIPDVL 170
           A + ELI G+I+++TTA   T ++  VL
Sbjct: 130 ARVKELIRGVIYLETTAEEFTRNLQQVL 157


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 318 SPTKEGLRFSKKQIIAIKSPTS 383
           SP+K+GLR  KK + AI+ P S
Sbjct: 75  SPSKQGLRRRKKALPAIEPPVS 96


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 318 SPTKEGLRFSKKQIIAIKSPTS 383
           SP+K+GLR  KK + AI+ P S
Sbjct: 75  SPSKQGLRRRKKALPAIEPPVS 96


>Z81107-1|CAB03225.1|  258|Caenorhabditis elegans Hypothetical
           protein R07H5.1 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 261 LMPAKTVPVSFARNKVLLGSPTKEGLRFSKKQII 362
           + P +   VSFA++ V+LGS +  G RF +  ++
Sbjct: 80  IAPKQNGIVSFAQSAVVLGSISYAGYRFVRSYVL 113


>Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 281 NSFSRHQVLCTTGGTDRRYYFR*HDSLVIDNINTGRATLH--YNFSHD 144
           +S SR Q+ C T  +DR    R +D +  ++++   AT++  +NF+ D
Sbjct: 427 DSLSR-QLFCMTYVSDRINLLRVYDRVSCEDVSVNSATIYLSFNFTSD 473


>Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 281 NSFSRHQVLCTTGGTDRRYYFR*HDSLVIDNINTGRATLH--YNFSHD 144
           +S SR Q+ C T  +DR    R +D +  ++++   AT++  +NF+ D
Sbjct: 427 DSLSR-QLFCMTYVSDRINLLRVYDRVSCEDVSVNSATIYLSFNFTSD 473


>U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein123 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 190 TSIPDVLPCTITLAMTGFVIW 128
           +SI D++PC + L +T  ++W
Sbjct: 225 SSISDIIPCILLLIVTILLVW 245


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 190 TSIPDVLPCTITLAMTGFVIW 128
           +SI D++PC + L +T  ++W
Sbjct: 225 SSISDIVPCILLLIVTCLLVW 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,632
Number of Sequences: 27780
Number of extensions: 188846
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)