Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F10
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   6.6  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 427 TPHFFFFKRLLCIRSFFKLQRN 492
           TP F F  R+LC++ F + + N
Sbjct: 596 TPSFPFVSRMLCLQFFLRFRAN 617


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -1

Query: 392 KYTSHLCPNGLLTNVIVKRALVVA*CTFINDDRMQSMRIQPRC*YKSDFIIHLHNLKRPT 213
           ++ S +C NG+  N+IV     +   TF+N   +QS     R     DF+ H   L    
Sbjct: 107 QHYSRVCRNGIDINLIVVGESSLGKTTFVN-SFLQSNDTNFRPKKTMDFVEHKATLSDGD 165

Query: 212 CRSTTSVVDPLG 177
            +   ++VD  G
Sbjct: 166 QKFNLTIVDTPG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,085
Number of Sequences: 5004
Number of extensions: 47079
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)