Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F10
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392     28   5.2  
11_01_0122 - 960346-960728,961356-961608                               28   6.8  
04_03_0627 + 18147789-18148052,18148492-18148955,18149863-18150043     28   6.8  
01_05_0076 + 17924875-17925192,17925900-17926010                       28   6.8  
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    27   9.0  
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    27   9.0  
06_03_0257 + 18846638-18846850,18846934-18847689                       27   9.0  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    27   9.0  
04_03_0780 - 19550106-19550809,19550982-19551003                       27   9.0  

>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
          Length = 313

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 431 GVTASWLRPIAVRKYTSHLCPNGLLTNVIV 342
           G+   W+  +  R YTSH CPN    +V V
Sbjct: 51  GLRMQWVFCLQHRSYTSHQCPNANQKDVTV 80


>11_01_0122 - 960346-960728,961356-961608
          Length = 211

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 93  GKSISKPIKHHITESSTKQCRQRKKVNAPERINDAGSRSAGG 218
           G  I +P +    E ++ Q  +  KV + ERI D G    GG
Sbjct: 9   GPRIQQPWRRSSEEDASAQRSRTTKVASHERIRDGGGGGGGG 50


>04_03_0627 + 18147789-18148052,18148492-18148955,18149863-18150043
          Length = 302

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 412 NHDAVTPHFFFFKRLLCIRSFFKLQRNKRTL 504
           NHDA  P F     + C +  F + RNK  L
Sbjct: 269 NHDATGPKFIQEYAIQCSKQLFDIYRNKEDL 299


>01_05_0076 + 17924875-17925192,17925900-17926010
          Length = 142

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 39  YNVGLYASKIQIQKSYRVGKSISKPIKHHITESSTKQCRQRKKVNAPERINDA 197
           YN   +     I+KSY   ++ +K +K  +   S +  R+ K V    RI  A
Sbjct: 32  YNKYAWDKGFSIRKSYAERRNAAKEVKRRVIVCSRQGYRESKHVKRDNRIRKA 84


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 358 NNPFGHKCDVYLRTAIGRNHDAVTPHFFFFKRLLCIRSFFKLQRNKRTLTT 510
           N P  H   V+    IGR    +T H    + LL  +S + L    +TL T
Sbjct: 247 NTPMEHPIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRT 297


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 122 VFYWFRDALSNPIRFLYLDFRCV*ADIIYFFYF 24
           V +WFR AL + +RFL LD      DI Y F F
Sbjct: 98  VNHWFRHALLHKVRFLLLD-----VDIWYRFPF 125


>06_03_0257 + 18846638-18846850,18846934-18847689
          Length = 322

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 373 HKCDVYLRTAIGRNHDAVTPHFFFFKRLLC 462
           H CD Y     G N+D + P F   +R  C
Sbjct: 201 HSCDNYRDRIYGANNDNIDPSFAALRRRSC 230


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 454 LLCIRSFFKLQRNKRTLTTWIG 519
           LLC R   KL RN  +L  W+G
Sbjct: 478 LLCARDTVKLLRNHASLALWVG 499


>04_03_0780 - 19550106-19550809,19550982-19551003
          Length = 241

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 325 TTSARFTMTFVNNPFGHKCDVYLRTAIGRNHDAVTPHFFFFKRLLCIRSFFKLQRNK 495
           TT  R +    N+  GHK   Y  TAIG  +   +      +R +    FF L+ N+
Sbjct: 97  TTIGRASKRGTNDNKGHKSRSYQSTAIGEQYRKSSTTAMQGRRAIIQGRFFSLRTNR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,229
Number of Sequences: 37544
Number of extensions: 278265
Number of successful extensions: 599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)