Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F10
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical ...    33   0.22 
AF016438-2|AAQ62455.1|  407|Caenorhabditis elegans Hypothetical ...    33   0.22 
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   6.1  
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical
           protein F44C8.9b protein.
          Length = 173

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 33  KVYNVGLYASKI-QIQKSYRVGKSISKPIKHHITESSTKQCRQRKKVNAPERI 188
           ++++ G Y  KI +++K Y+VG   SK  K     SS+    +R KV AP+ +
Sbjct: 55  RIFDAGAYRCKICRLKKCYKVGMDASKFQKDRDLISSSNAYLKRTKVYAPQSL 107


>AF016438-2|AAQ62455.1|  407|Caenorhabditis elegans Hypothetical
           protein F44C8.9a protein.
          Length = 407

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 33  KVYNVGLYASKI-QIQKSYRVGKSISKPIKHHITESSTKQCRQRKKVNAPERI 188
           ++++ G Y  KI +++K Y+VG   SK  K     SS+    +R KV AP+ +
Sbjct: 55  RIFDAGAYRCKICRLKKCYKVGMDASKFQKDRDLISSSNAYLKRTKVYAPQSL 107


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 117 KHHITESSTKQCRQRKKVNAPERINDAGSRSAGGTLEIMQMND 245
           KHH  +S+ +   +R+    P   ++ G+ S+GG   ++  N+
Sbjct: 159 KHHHRDSNHRHAHKRRHQEEPNNNSNNGTSSSGGAPPLVPNNE 201


>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
            ZK337.1c protein.
          Length = 1516

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 39   YNVGLYASKIQIQKSYRVGKSISKPIKHHITESS--TKQCRQRKKV 170
            Y + + A  +Q+ KS + GK+     KH I E S   K    +KKV
Sbjct: 1154 YTMAVVAYALQLAKSKQAGKAFENLKKHKIVEKSGDVKFASAQKKV 1199


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
            ZK337.1b protein.
          Length = 1501

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 39   YNVGLYASKIQIQKSYRVGKSISKPIKHHITESS--TKQCRQRKKV 170
            Y + + A  +Q+ KS + GK+     KH I E S   K    +KKV
Sbjct: 1157 YTMAVVAYALQLAKSKQAGKAFENLKKHKIVEKSGDVKFASAQKKV 1202


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
            ZK337.1a protein.
          Length = 1508

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 39   YNVGLYASKIQIQKSYRVGKSISKPIKHHITESS--TKQCRQRKKV 170
            Y + + A  +Q+ KS + GK+     KH I E S   K    +KKV
Sbjct: 1146 YTMAVVAYALQLAKSKQAGKAFENLKKHKIVEKSGDVKFASAQKKV 1191


>U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical
           protein W05H7.4c protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 436 FFFFKRLLCIRSFF 477
           FFFF   LC+RSFF
Sbjct: 176 FFFFSIFLCVRSFF 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,197,167
Number of Sequences: 27780
Number of extensions: 262235
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)