Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F09
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 40 8e-04
03_02_0485 - 8808139-8808618 40 0.001
03_02_0484 + 8805053-8805538 40 0.001
03_02_0483 - 8804021-8804485 40 0.001
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 35 0.041
01_01_0229 - 1943473-1943922 34 0.055
01_01_0231 + 1951047-1951499 34 0.072
01_01_0227 + 1933247-1933699 31 0.38
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 31 0.51
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 28 4.7
11_02_0016 - 7380933-7382027 28 4.7
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 27 8.3
05_07_0214 - 28451861-28453069 27 8.3
01_07_0105 - 41104655-41104851,41105818-41107150 27 8.3
>03_02_0478 + 8775892-8776377
Length = 161
Score = 40.3 bits (90), Expect = 8e-04
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 446 TVESRLSSDGVLTV 487
+++ + +GVLTV
Sbjct: 130 QIKASM-ENGVLTV 142
>03_02_0485 - 8808139-8808618
Length = 159
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 446 TVESRLSSDGVLTV 487
+++ + +GVLTV
Sbjct: 128 QIKASM-ENGVLTV 140
>03_02_0484 + 8805053-8805538
Length = 161
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 446 TVESRLSSDGVLTV 487
+++ + +GVLTV
Sbjct: 130 QIKASM-ENGVLTV 142
>03_02_0483 - 8804021-8804485
Length = 154
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 446 TVESRLSSDGVLTV 487
+++ + +GVLTV
Sbjct: 123 QIKASM-ENGVLTV 135
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 34.7 bits (76), Expect = 0.041
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 446 TVESRLSSDGVLTV 487
V++ L +GVLTV
Sbjct: 119 QVKAGL-ENGVLTV 131
>01_01_0229 - 1943473-1943922
Length = 149
Score = 34.3 bits (75), Expect = 0.055
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 446 TVESRLSSDGVLTV 487
V++ + +GVLTV
Sbjct: 118 QVKASM-ENGVLTV 130
>01_01_0231 + 1951047-1951499
Length = 150
Score = 33.9 bits (74), Expect = 0.072
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Frame = +2
Query: 290 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 445
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 446 TVESRLSSDGVLTV 487
V++ + +GVLTV
Sbjct: 119 QVKAGM-ENGVLTV 131
>01_01_0227 + 1933247-1933699
Length = 150
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 350 VEGKHEEKKDQHGYISRQFTRRYALPEGCTPETVESRLSSDGVLTV 487
V+GK++E+ S +F RR+ LP G + V + + +GVLTV
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTV 131
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Frame = +2
Query: 209 PWRHLAATARDVGSCIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQ-- 382
P R LA + + D + ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 383 ----HGYISRQ----FTRRYALPEGCTPETVESRLSSDGVLTV 487
G+ + + R ALP+ C V + L +GVL V
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL-KNGVLLV 223
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +2
Query: 251 CIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQHGYISRQF 406
C+ +++ + + +HF E++S K+A V++ +H+E + H ++ R++
Sbjct: 1038 CVGTREEECRTPMKQEHFVKEDLSEKSA----VLQNEHDE--EAHKFVDRRY 1083
>11_02_0016 - 7380933-7382027
Length = 364
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 286 IHLELVFVCFDTGTDVSGGGGE--MTPRAVVFVFYH 185
+ L + C TG + GGGGE T V VF+H
Sbjct: 61 LRARLFYPCRPTGGEAGGGGGEAGATKPLPVVVFFH 96
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 245 GSCIKADKDKFQVN-LDVQHFTPEEISVKTADGYIVVEGK 361
G +K + +F N + +Q F E ISV DG++ + K
Sbjct: 407 GELVKWNATRFGTNCMFLQSFLKEAISVHAVDGFLYIHAK 446
>05_07_0214 - 28451861-28453069
Length = 402
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 268 FVCFDTGTDVSGGGGEM 218
FV D G+DV GGGGE+
Sbjct: 194 FVEDDAGSDVEGGGGEL 210
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 263 DKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQHGYISR 400
D K N++ + EEI V+ + I+V + EE++++ ISR
Sbjct: 360 DAKKETSNIEAINVEQEEIKVEEEEEKIIVSQETEEEEEKSAVISR 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,203
Number of Sequences: 37544
Number of extensions: 225126
Number of successful extensions: 599
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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