Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F08
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   1.8  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   3.1  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   5.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   7.2  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.2  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 310 DATDDIRACFFANYTSALGTFKI 242
           DA   +   FF NYTSA G F I
Sbjct: 229 DAVKQMNPEFFPNYTSAAGVFAI 251


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 190 NYTPHTYTQVHEF-RNG 143
           NY+P TYT++ +F RNG
Sbjct: 154 NYSPKTYTKIFDFLRNG 170


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 434 FYHRKLRLILELYMWVRTHVHRRVIRPHYQP--YNHRF 327
           F+HR L    +LY  +  H HR  + P+     YNH F
Sbjct: 147 FWHRYLHYNKKLYNMIHAHHHRLQV-PYAMGALYNHPF 183


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 149 TELMYLRICVWGVVTLVYDKVTVSR 223
           T++ Y+ +CV  + +L +DK  +++
Sbjct: 191 TDMKYVEVCVDSITSLSFDKTDMTK 215


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 327 EAMIVRLVVRPDYASMDVGSNPHVQL 404
           ++ + RL + PD   +    NPHV+L
Sbjct: 40  DSQVNRLCISPDKKFLAAAGNPHVRL 65


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 102 HGQQHSMQSTLRRIFPDNY 46
           H + HS+ + LR  +PDN+
Sbjct: 218 HAKSHSITTFLRDFYPDNW 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,668
Number of Sequences: 5004
Number of extensions: 37839
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)