Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F08
         (454 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein.              30   3.2  

>AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein.
          Length = 2557

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = -2

Query: 426 PETQANFRVVHVGSNPRP*TRNPAALPTVQSSLHLSIIMTQLTISERVFLQIIHRL*EPL 247
           PE+      + V + P P       +PTV S+ H  +    L    R  L   H   + L
Sbjct: 636 PESNLTEEPLEVSAAPGP-VEQKTGIPTVSSTSHSHV--EDLLFFYRQTLPDGHLTDQAL 692

Query: 246 KYSCTCRQRDTVTLS*TNVTTPHTH 172
           K S      D  T + T ++TPH+H
Sbjct: 693 KVSAVSGPADQKTGTATVLSTPHSH 717


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,834,926
Number of Sequences: 237096
Number of extensions: 1287455
Number of successful extensions: 5511
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5511
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)