Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F07
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 56 2e-09
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.006
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.17
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.23
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.31
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.31
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.31
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 0.93
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 27 1.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 2.2
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 5.0
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 24 8.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 8.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 56.0 bits (129), Expect = 2e-09
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 47 SNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPK 220
+ FG +++ + DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 268 NQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 44.0 bits (99), Expect = 1e-05
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +2
Query: 53 FGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 226
FG +++ + D T + +GF F+TF++ + VNE++ + + + GK +D KRA P+ +
Sbjct: 186 FGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREE 242
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.006
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 53 FGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKTPKQTIGGKEVDV 202
FG + +V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.9 bits (64), Expect = 0.17
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 56 GNIIEVEMPFDKTKNQRKGFCFITF--ESEQVVNELLK 163
G + V +P DKT ++KG+ F+ F V+++ LK
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.23
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 41 ISSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 142
+ S FG +++ + DK + KGF F+ +E ++
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.1 bits (62), Expect = 0.31
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 FGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKTPKQTIGGKE--VDVKR 208
+G I + MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 122 YGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.31
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 56 GNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPK 220
G+I + +P D + KGF ++TF + ++ I G+ + +TP+
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 53 FGNIIEVEMPFDKTKNQRKGFCFITFESEQVVN-ELLKTPKQTIGGKEVDVKRATPKP 223
+G I+ + D + KG+ ++ FE+ + + + I G+ V++ + P+P
Sbjct: 286 YGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.31
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 47 SNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKT 166
S FG ++ + M ++ K + FI FES V N + +T
Sbjct: 126 SQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 0.93
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 79 HFYLYYISKI--RRNFLFHHLRFHY 11
H YLY+ + R NF HHL +Y
Sbjct: 660 HTYLYHFGRTDHRHNFSLHHLNLYY 684
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 38 KISSNFGNIIEVEMPFDKTKNQRKGFCFITFES-EQVVNELLKTPKQTIGGKEVDVKRA 211
+I S FG + V + + +GF F++F + E+ + + Q G+ ++V++A
Sbjct: 119 QIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 53 FGN-IIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPK 220
FG + + + D + +GF ++ FE+ ++ L + + G+ V + A P+
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 53 FGNIIEVEMPFDKTKNQRKGFCFITF 130
FG I V + DK + KGF F+++
Sbjct: 225 FGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 68 EVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP-----KQTIGGKEVDVKRAT 214
+ E+P D ++ R +S+ N +LKTP K+T+ K++ AT
Sbjct: 43 DAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVNFKDISKDAAT 96
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 50 NFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 226
+F ++E ++P + T+NQ KGF S++ + +L ++ + E ++ T + D
Sbjct: 1513 DFAPLLE-DVP-NNTRNQIKGFVEKAISSKRAIAKLYSASEEKLFSTEKALREITKERD 1569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,930
Number of Sequences: 5004
Number of extensions: 17746
Number of successful extensions: 74
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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