Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F07
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.21 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.48 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.48 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 204 FTSTSLPPIVCLGVFSSSFTTCSDS 130
           F  T +PP  CL VFSS   +C  S
Sbjct: 139 FDQTGIPPTTCL-VFSSGSVSCVPS 162


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 359 LPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 237
           L   + + R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 877 LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 917


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 359  LPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 237
            L   + + R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 915  LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 955


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 78  ISTSIIFPKLEEIFYFII 25
           +S S+ FP++   FYF +
Sbjct: 244 LSNSLNFPQIRGEFYFFL 261


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 78  ISTSIIFPKLEEIFYFII 25
           +S S+ FP++   FYF +
Sbjct: 244 LSNSLNFPQIRGEFYFFL 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,216
Number of Sequences: 438
Number of extensions: 1325
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)