Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F06
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 68 7e-13
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 65 5e-12
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 61 1e-10
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 0.70
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.8
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 25 4.9
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 4.9
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 25 4.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 4.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 4.9
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 68.1 bits (159), Expect = 7e-13
Identities = 32/91 (35%), Positives = 45/91 (49%)
Frame = +2
Query: 134 VAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 313
+ +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGS
Sbjct: 20 IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAA 79
Query: 314 XXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 80 AAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 65.3 bits (152), Expect = 5e-12
Identities = 33/91 (36%), Positives = 46/91 (50%)
Frame = +2
Query: 134 VAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 313
+ +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGSG
Sbjct: 20 IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSG-AGAAPVAGGAAAP 78
Query: 314 XXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 79 AAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 60.9 bits (141), Expect = 1e-10
Identities = 30/91 (32%), Positives = 44/91 (48%)
Frame = +2
Query: 134 VAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 313
+ +T +K+ ++ KA V+VEP W +FAKALEG ++++L+ NIGS
Sbjct: 20 IEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS-AGAASAPTAAGAGA 78
Query: 314 XXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 79 AAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.70
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 273 TPDPML---VIKSRTLMPSKAFANRPGQYGS--TSTAAAFSMVEIFSPVTATSLLPG*GR 109
+P+P+ IK PSK F NRP ++ S + T + S VE V SLL
Sbjct: 297 SPEPIFNNRFIKIFWYNPSKGFHNRPKKFASHKSPTTSDSSNVESSEDVDPASLLQ--NE 354
Query: 108 SKHKLIQ 88
HKLI+
Sbjct: 355 EFHKLIE 361
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 204 GQYGSTSTAAAFSMV-EIFSPVTATSLLPG 118
G +GST A A + ++F+PV T +LPG
Sbjct: 206 GVFGSTPLANAGGTISDLFTPVQRTYVLPG 235
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 377 DDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 377 DDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 137 AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 256
A++ E+IS IL + +W AL G+N++D I+
Sbjct: 132 ALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 377 DDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 377 DDDMGFGLFD 406
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,456
Number of Sequences: 5004
Number of extensions: 25545
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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