Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F06
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    73   1e-13
07_03_0260 + 15928932-15929255,15930174-15930347                       36   0.019
05_03_0090 - 8330283-8330831                                           27   8.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/94 (38%), Positives = 47/94 (50%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 304
           ++ + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG           
Sbjct: 17  DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAA 76

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                   DDDMGF LFD
Sbjct: 77  PAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = -3

Query: 216 ANRPGQYGSTSTAAAFSMVEIFSPVTATSLLPG*GRSKHKLIQLLMPF*MLYVQVAKR 43
           A RP   G+T+ AA  S+V   S V    L+ G  R+ HKL+Q+ +PF +L V  A R
Sbjct: 88  ARRPWA-GATALAAGVSVVTAMSAVLGEFLVSG--RATHKLLQMYVPFAVLAVIAALR 142


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 233
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,439
Number of Sequences: 37544
Number of extensions: 180295
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)