Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F06
         (506 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    99   2e-21
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    99   2e-21
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    99   2e-21
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    97   9e-21
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    28   8.3  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =   99 bits (238), Expect = 2e-21
 Identities = 54/95 (56%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXX 301
           ++DVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                    DDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +3

Query: 75  MASKAELACVYSALILV 125
           M++KAELACVY++LILV
Sbjct: 1   MSTKAELACVYASLILV 17


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =   99 bits (238), Expect = 2e-21
 Identities = 54/95 (56%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXX 301
           ++DVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                    DDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +3

Query: 75  MASKAELACVYSALILV 125
           M++KAELACVY++LILV
Sbjct: 1   MSTKAELACVYASLILV 17


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =   99 bits (238), Expect = 2e-21
 Identities = 54/95 (56%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXX 301
           ++DVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                    DDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +3

Query: 75  MASKAELACVYSALILV 125
           M++KAELACVY++LILV
Sbjct: 1   MSTKAELACVYASLILV 17


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 53/95 (55%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXX 301
           ++DVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAAP 77

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                    DDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 255 VIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEI 154
           +I S+ L+P+K   N P QY  T+   A    +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,393
Number of Sequences: 53049
Number of extensions: 296980
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)