Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F06
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    93   1e-19
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    89   1e-18
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 43/94 (45%), Positives = 56/94 (59%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 304
           +++VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                   DDDMGFGLFD
Sbjct: 78  AAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 75  MASKAELACVYSALIL 122
           MAS  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 42/94 (44%), Positives = 55/94 (58%)
 Frame = +2

Query: 125 NNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 304
           +++VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 406
                                   DDDMGFGLFD
Sbjct: 78  AAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 75  MASKAELACVYSALIL 122
           MAS  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 28/109 (25%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
 Frame = +2

Query: 92  ISLCLLRPYPGNNDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 271
           +S  LL    GN +  V  + +  IL A  VD +     L    L G  V +LI    +G
Sbjct: 4   VSAYLLAVLGGNANPKV--DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAG 61

Query: 272 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XDDDMGFGLFD 406
           +                                      DDDMGFGLFD
Sbjct: 62  LVSVSGGAAPAAAAAPAAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 377 DDDMGFGLFD 406
           DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 377 DDDMGFGLFD 406
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,004,998
Number of Sequences: 27780
Number of extensions: 145328
Number of successful extensions: 262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)