Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F05
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   172   3e-44
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   171   4e-44
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.076
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.23 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    28   0.71 
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    27   1.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   5.0  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   5.0  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   6.6  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   8.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    25   8.7  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  172 bits (418), Expect = 3e-44
 Identities = 86/135 (63%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
 Frame = +1

Query: 103 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 282
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 283 WRVISSIEQKTE--WSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKV 456
           WR+ISSIEQK E   + R+  + KEYR K+E EL +IC+DVL +L+KHLIP A+  ESKV
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120

Query: 457 FYLKMKGDYYRYLAE 501
           FY KMKGDYYRYLAE
Sbjct: 121 FYYKMKGDYYRYLAE 135


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  171 bits (417), Expect = 4e-44
 Identities = 84/136 (61%), Positives = 104/136 (76%), Gaps = 2/136 (1%)
 Frame = +1

Query: 106 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 285
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 286 RVISSIEQKTE--WSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKVF 459
           R++SSIEQK E   +  + ++ KEYR K+E+EL  IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122

Query: 460 YLKMKGDYYRYLAEVA 507
           Y KMKGDYYRYLAE A
Sbjct: 123 YYKMKGDYYRYLAEFA 138


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +1

Query: 106 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 276
           SV    + ++ K  ++ E + ++ + +K V+  ET  E+SN+E N LL + YK V     
Sbjct: 3   SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61

Query: 277 SSWRVIS 297
           S+W   S
Sbjct: 62  STWATFS 68


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = +1

Query: 97   STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARR 276
            S  S   EEL+ R +     + Y+ MA  + E  E   ++ +    LLS  Y N      
Sbjct: 3004 SDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAE 3062

Query: 277  SSWRVISSIEQKTEWSERKQQMAKEYRVKVEKELREIC--YDVLCL 408
              +R+ + +E+          +  EY   +E+ L++ C  Y+  C+
Sbjct: 3063 LFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCI 3108


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 112 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 291
           +K+E  QR  +  Q  R D M    +    +G   S+ +    SV+ +    +R  S+  
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374

Query: 292 ISSIEQKTEWSE---RKQQMAKEYRVKVEKELR 381
            S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 230 ETFFPLLIKMWSAPDGHHGESFPLLNRKPN 319
           E F P L++  +A D  +GE+  LL R+PN
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREPN 133


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 426  YKVLVQ*TQDIIADFSELLFYFNPIFFCHLL 334
            +  L Q ++++I   +EL F+    F CHLL
Sbjct: 1755 FHALSQPSRELICKMTELNFFAADFFLCHLL 1785


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 397 VLCLLDKHLIPKASN-PESKVFYLKMKGD--YYRYL 495
           VL  L+  L+  A+  PE K+FY K  GD  Y +YL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYL 544


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 507 GHFCEIPVVISLHFEVKYFTF 445
           G+FC++P V+ L    K++ F
Sbjct: 341 GNFCDLPKVVELKNRYKFYLF 361


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 253 KNVVGARRSSWRVISSIEQKTEWSERKQQMAKEYRVKVE 369
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 492 IPVVISLHFEVKYFT-FWIT 436
           +P++I LHF  K FT  W+T
Sbjct: 62  LPILIRLHFYKKLFTILWLT 81


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 394 DVLCLLDKHLIPKASNPESKVFY 462
           DV+C  +  L+P    PE K+FY
Sbjct: 178 DVICGKEAFLLPLNEYPEYKLFY 200


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 224 KKETFFPLLIKMWSAPDGHHGESFPLLNRKPNGRKEN 334
           +K  FF LLI +++        SF   +++ NG+  N
Sbjct: 12  RKFVFFSLLILLFAHGASSSSSSFNYFDKRTNGKANN 48


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 347 FAICC--FLSDHSVFCSIEEMTRHDDR 273
           F  CC  F+S +S+F S++E    ++R
Sbjct: 221 FYSCCIVFISSYSIFLSVKESKESENR 247


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 409 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLA 498
           +++H + K+  S P S+  YLK+    YR+LA
Sbjct: 5   IERHHVKKSQRSKPASENVYLKLLVKLYRFLA 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,915
Number of Sequences: 5004
Number of extensions: 41687
Number of successful extensions: 146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)